8FOJ
Cryo-EM structure of S. cerevisiae DNA polymerase alpha-primase complex in the post RNA handoff state
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth C] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8053388 | 3000135 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Metallo-dependent phosphatases | 8053387 | 3001067 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth A] | F_UNCLASSIFIED | e8fojA2 | A: alpha arrays | X: Insert all-alpha domain in prim-pol (From Topology) | H: Insert all-alpha domain in prim-pol (From Topology) | T: Insert all-alpha domain in prim-pol | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth A] | PF01896 | e8fojA1 | A: a+b complex topology | X: Prim-pol domain (From Topology) | H: Prim-pol domain (From Topology) | T: Prim-pol domain | F: PF01896 | ECOD (1.6) |
C [auth B] | PF04104 | e8fojB1 | A: alpha complex topology | X: Cryptochrome/photolyase FAD-binding domain-related (From Homology) | H: Cryptochrome/photolyase FAD-binding domain-related | T: Fe-S cluster domain of DNA primase | F: PF04104 | ECOD (1.6) |
C [auth B] | PF04104 | e8fojB2 | A: alpha complex topology | X: PriB N-terminal domain-like (From Topology) | H: PriB N-terminal domain-like (From Topology) | T: PriB N-terminal domain-like | F: PF04104 | ECOD (1.6) |
D [auth C] | PF22062 | e8fojC1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF22062 | ECOD (1.6) |
D [auth C] | PF04042 | e8fojC2 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: PF04042 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth 1] | PF03104 | DNA polymerase family B, exonuclease domain (DNA_pol_B_exo1) | DNA polymerase family B, exonuclease domain | - | Family |
A [auth 1] | PF00136 | DNA polymerase family B (DNA_pol_B) | DNA polymerase family B | - | Family |
B [auth A] | PF01896 | DNA primase small subunit (DNA_primase_S) | DNA primase small subunit | - | Family |
C [auth B] | PF04104 | Eukaryotic and archaeal DNA primase, large subunit (DNA_primase_lrg) | Eukaryotic and archaeal DNA primase, large subunit | - | Family |
D [auth C] | PF04042 | DNA polymerase alpha/epsilon subunit B (DNA_pol_E_B) | DNA polymerase alpha/epsilon subunit B | - | Family |
D [auth C] | PF08418 | DNA polymerase alpha subunit B N-terminal (Pol_alpha_B_N) | DNA polymerase alpha subunit B N-terminal | This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation [1]. This domain adopts an OB fold [2]. | Domain |