8FJL
Golden Shiner Reovirus Core Tropical Vertex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF07925 | e8fjlA4 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: PF07925 | ECOD (1.6) |
A | PF07925 | e8fjlA1 | A: alpha complex topology | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 (From Topology) | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 (From Topology) | T: C-terminal additional helical subdomain in reovirus polymerase lambda3 | F: PF07925 | ECOD (1.6) |
A | PF07925 | e8fjlA3 | A: alpha complex topology | X: N-terminal additional helical subdomain in reovirus polymerase lambda3 (From Homology) | H: N-terminal additional helical subdomain in reovirus polymerase lambda3 | T: N-terminal additional helical subdomain in reovirus polymerase lambda3 | F: PF07925 | ECOD (1.6) |
A | PF07925 | e8fjlA2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF07925 | ECOD (1.6) |
AA [auth a] | PF03084 | e8fjla1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
BA [auth b] | PF03084 | e8fjlb1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
DA [auth d] | PF03084 | e8fjld1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
EA [auth e] | PF03084 | e8fjle1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
GA [auth g] | PF03084 | e8fjlg1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
HA [auth h] | PF03084 | e8fjlh1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
NA [auth n] | PF03084 | e8fjln1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
V | PF03084 | e8fjlV1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
W | PF03084 | e8fjlW1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
X | PF03084 | e8fjlX1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
CA [auth c] | PF06016 | e8fjlc2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF06016 | ECOD (1.6) |
CA [auth c] | PF21060 | e8fjlc8 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21060 | ECOD (1.6) |
CA [auth c] | PF21061 | e8fjlc3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21061 | ECOD (1.6) |
CA [auth c] | PF21062,PF21065 | e8fjlc5 | A: a+b two layers | X: ferredoxin-like domain in VP1 (From Topology) | H: ferredoxin-like domain in VP1 (From Topology) | T: ferredoxin-like domain in VP1 | F: PF21062,PF21065 | ECOD (1.6) |
CA [auth c] | PF21063 | e8fjlc6 | A: a+b three layers | X: HIT-like | H: HIT-related (From Topology) | T: HIT-related | F: PF21063 | ECOD (1.6) |
CA [auth c] | PF21064 | e8fjlc1 | A: a+b complex topology | X: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | H: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | T: Rotavirus NSP2 fragment, N-terminal domain | F: PF21064 | ECOD (1.6) |
CA [auth c] | PF21065 | e8fjlc4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21065 | ECOD (1.6) |
CA [auth c] | PF21066 | e8fjlc7 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21066 | ECOD (1.6) |
FA [auth f] | PF06016 | e8fjlf5 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF06016 | ECOD (1.6) |
FA [auth f] | PF21060 | e8fjlf8 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21060 | ECOD (1.6) |
FA [auth f] | PF21061 | e8fjlf3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21061 | ECOD (1.6) |
FA [auth f] | PF21062,PF21065 | e8fjlf4 | A: a+b two layers | X: ferredoxin-like domain in VP1 (From Topology) | H: ferredoxin-like domain in VP1 (From Topology) | T: ferredoxin-like domain in VP1 | F: PF21062,PF21065 | ECOD (1.6) |
FA [auth f] | PF21063 | e8fjlf2 | A: a+b three layers | X: HIT-like | H: HIT-related (From Topology) | T: HIT-related | F: PF21063 | ECOD (1.6) |
FA [auth f] | PF21064 | e8fjlf7 | A: a+b complex topology | X: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | H: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | T: Rotavirus NSP2 fragment, N-terminal domain | F: PF21064 | ECOD (1.6) |
FA [auth f] | PF21065 | e8fjlf1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21065 | ECOD (1.6) |
FA [auth f] | PF21066 | e8fjlf6 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21066 | ECOD (1.6) |
IA [auth i] | PF06016 | e8fjli8 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF06016 | ECOD (1.6) |
IA [auth i] | PF21060 | e8fjli6 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21060 | ECOD (1.6) |
IA [auth i] | PF21061 | e8fjli4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21061 | ECOD (1.6) |
IA [auth i] | PF21062,PF21065 | e8fjli7 | A: a+b two layers | X: ferredoxin-like domain in VP1 (From Topology) | H: ferredoxin-like domain in VP1 (From Topology) | T: ferredoxin-like domain in VP1 | F: PF21062,PF21065 | ECOD (1.6) |
IA [auth i] | PF21063 | e8fjli2 | A: a+b three layers | X: HIT-like | H: HIT-related (From Topology) | T: HIT-related | F: PF21063 | ECOD (1.6) |
IA [auth i] | PF21064 | e8fjli3 | A: a+b complex topology | X: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | H: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | T: Rotavirus NSP2 fragment, N-terminal domain | F: PF21064 | ECOD (1.6) |
IA [auth i] | PF21065 | e8fjli1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21065 | ECOD (1.6) |
IA [auth i] | PF21066 | e8fjli5 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21066 | ECOD (1.6) |
Z | PF06016 | e8fjlZ2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF06016 | ECOD (1.6) |
Z | PF21060 | e8fjlZ8 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21060 | ECOD (1.6) |
Z | PF21061 | e8fjlZ7 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21061 | ECOD (1.6) |
Z | PF21062,PF21065 | e8fjlZ5 | A: a+b two layers | X: ferredoxin-like domain in VP1 (From Topology) | H: ferredoxin-like domain in VP1 (From Topology) | T: ferredoxin-like domain in VP1 | F: PF21062,PF21065 | ECOD (1.6) |
Z | PF21063 | e8fjlZ3 | A: a+b three layers | X: HIT-like | H: HIT-related (From Topology) | T: HIT-related | F: PF21063 | ECOD (1.6) |
Z | PF21064 | e8fjlZ4 | A: a+b complex topology | X: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | H: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | T: Rotavirus NSP2 fragment, N-terminal domain | F: PF21064 | ECOD (1.6) |
Z | PF21065 | e8fjlZ6 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21065 | ECOD (1.6) |
Z | PF21066 | e8fjlZ1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21066 | ECOD (1.6) |
Y | PF06016 | e8fjlY1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF06016 | ECOD (1.6) |
Y | PF21060 | e8fjlY7 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21060 | ECOD (1.6) |
Y | PF21061 | e8fjlY4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21061 | ECOD (1.6) |
Y | PF21062,PF21065 | e8fjlY2 | A: a+b two layers | X: ferredoxin-like domain in VP1 (From Topology) | H: ferredoxin-like domain in VP1 (From Topology) | T: ferredoxin-like domain in VP1 | F: PF21062,PF21065 | ECOD (1.6) |
Y | PF21063 | e8fjlY6 | A: a+b three layers | X: HIT-like | H: HIT-related (From Topology) | T: HIT-related | F: PF21063 | ECOD (1.6) |
Y | PF21064 | e8fjlY5 | A: a+b complex topology | X: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | H: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | T: Rotavirus NSP2 fragment, N-terminal domain | F: PF21064 | ECOD (1.6) |
Y | PF21065 | e8fjlY3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21065 | ECOD (1.6) |
Y | PF21066 | e8fjlY8 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21066 | ECOD (1.6) |
C | PF22033 | e8fjlC1 | A: a+b complex topology | X: Inner layer core protein p3-related (From Topology) | H: Inner layer core protein p3-related (From Topology) | T: Inner layer core protein p3-related | F: PF22033 | ECOD (1.6) |
D | PF22033 | e8fjlD2 | A: a+b complex topology | X: Inner layer core protein p3-related (From Topology) | H: Inner layer core protein p3-related (From Topology) | T: Inner layer core protein p3-related | F: PF22033 | ECOD (1.6) |
D | PF13912 | e8fjlD1 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: PF13912 | ECOD (1.6) |
F | PF22033 | e8fjlF1 | A: a+b complex topology | X: Inner layer core protein p3-related (From Topology) | H: Inner layer core protein p3-related (From Topology) | T: Inner layer core protein p3-related | F: PF22033 | ECOD (1.6) |
F | PF13912 | e8fjlF2 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: PF13912 | ECOD (1.6) |
H | PF22033 | e8fjlH1 | A: a+b complex topology | X: Inner layer core protein p3-related (From Topology) | H: Inner layer core protein p3-related (From Topology) | T: Inner layer core protein p3-related | F: PF22033 | ECOD (1.6) |
H | PF13912 | e8fjlH2 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: PF13912 | ECOD (1.6) |
I | PF13912,PF22033 | e8fjlI1 | A: a+b complex topology | X: Inner layer core protein p3-related (From Topology) | H: Inner layer core protein p3-related (From Topology) | T: Inner layer core protein p3-related | F: PF13912,PF22033 | ECOD (1.6) |
J | PF22033 | e8fjlJ1 | A: a+b complex topology | X: Inner layer core protein p3-related (From Topology) | H: Inner layer core protein p3-related (From Topology) | T: Inner layer core protein p3-related | F: PF22033 | ECOD (1.6) |
J | PF13912 | e8fjlJ2 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: PF13912 | ECOD (1.6) |
L | PF22033 | e8fjlL1 | A: a+b complex topology | X: Inner layer core protein p3-related (From Topology) | H: Inner layer core protein p3-related (From Topology) | T: Inner layer core protein p3-related | F: PF22033 | ECOD (1.6) |
L | PF13912 | e8fjlL2 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: PF13912 | ECOD (1.6) |
M | F_UNCLASSIFIED | e8fjlM1 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07925 | Reovirus RNA-dependent RNA polymerase lambda 3 (RdRP_5) | Reovirus RNA-dependent RNA polymerase lambda 3 | - | Family | |
PF07781 | Reovirus minor core protein Mu-2 (Reovirus_Mu2) | Reovirus minor core protein Mu-2 | - | Family | |
PF03084 | Reoviral Sigma1/Sigma2 family (Sigma_1_2) | Reoviral Sigma1/Sigma2 family | - | Family | |
CA [auth c], FA [auth f], IA [auth i], Y, Z | PF21064 | Reovirus core-spike protein lambda-2 (L2), N-terminal (Reovirus_L2_N) | Reovirus core-spike protein lambda-2 (L2), N-terminal | Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ... | Domain |
CA [auth c], FA [auth f], IA [auth i], Y, Z | PF21063 | Reovirus core-spike protein lambda-2 (L2), GTase domain (Reovirus_L2_GTase) | Reovirus core-spike protein lambda-2 (L2), GTase domain | Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ... | Domain |
CA [auth c], FA [auth f], IA [auth i], Y, Z | PF21066 | Reovirus core-spike protein lambda-2 (L2), methyltransferase-2 (Reovirus_L2_MT2) | Reovirus core-spike protein lambda-2 (L2), methyltransferase-2 | Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ... | Domain |
CA [auth c], FA [auth f], IA [auth i], Y, Z | PF21065 | Reovirus core-spike protein lambda-2 (L2), methyltransferase-1 (Reovirus_L2_MT1) | Reovirus core-spike protein lambda-2 (L2), methyltransferase-1 | Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ... | Domain |
CA [auth c], FA [auth f], IA [auth i], Y, Z | PF21060 | Reovirus core-spike protein lambda-2 (L2), 6th domain (Reovirus_L2_6th) | Reovirus core-spike protein lambda-2 (L2), 6th domain | Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ... | Domain |
CA [auth c], FA [auth f], IA [auth i], Y, Z | PF06016 | Reovirus core-spike protein lambda-2 (L2), C-terminal (Reovirus_L2_8th) | Reovirus core-spike protein lambda-2 (L2), C-terminal | Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ... | Domain |
CA [auth c], FA [auth f], IA [auth i], Y, Z | PF21062 | Reovirus core-spike protein lambda-2 (L2), ferredoxin-like domain (Reovirus_L2_4th) | Reovirus core-spike protein lambda-2 (L2), ferredoxin-like domain | Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ... | Domain |
CA [auth c], FA [auth f], IA [auth i], Y, Z | PF21061 | Reovirus core-spike protein lambda-2 (L2), 7th domain (Reovirus_L2_7th) | Reovirus core-spike protein lambda-2 (L2), 7th domain | Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ... | Domain |
PF13912 | C2H2-type zinc finger (zf-C2H2_6) | C2H2-type zinc finger | - | Domain | |