8FE4 | pdb_00008fe4

Structure of dengue virus (DENV2) in complex with prM13, an anti-PrM monoclonal antibody

External Resource: Annotation

Domain Annotation: ECOD Classification
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth L]	AAR2_1st	e8fe4L1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: AAR2_1st	ECOD (develop294)
L [auth P]	AAR2_1st	e8fe4P1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: AAR2_1st	ECOD (develop294)
H [auth N]	AAR2_1st	e8fe4N1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: AAR2_1st	ECOD (develop294)
K [auth O]	AAR2_1st	e8fe4O1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: AAR2_1st	ECOD (develop294)
G [auth M]	AAR2_1st	e8fe4M1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: AAR2_1st	ECOD (develop294)
C [auth H]	AAR2_1st	e8fe4H1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: AAR2_1st	ECOD (develop294)
J [auth F]	AAR2_1st	e8fe4F1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: AAR2_1st	ECOD (develop294)
F [auth D]	AAR2_1st	e8fe4D1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: AAR2_1st	ECOD (develop294)
B	AAR2_1st	e8fe4B1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: AAR2_1st	ECOD (develop294)
I [auth E]	AAR2_1st	e8fe4E1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: AAR2_1st	ECOD (develop294)
E [auth C]	AAR2_1st	e8fe4C1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: AAR2_1st	ECOD (develop294)
A	AAR2_1st	e8fe4A1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: AAR2_1st	ECOD (develop294)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
D [auth L], H [auth N], L [auth P]	Light Chain	IGKV4	Kappa	prm protein	SAbDab (2026-03-20)
C [auth H], G [auth M], K [auth O]	Heavy Chain	IGHV1	-	prm protein	SAbDab (2026-03-20)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth L], H [auth N], L [auth P]	prM13 Fab Light Chain	-	-	-
C [auth H], G [auth M], K [auth O]	prM13 Fab Heavy Chain	-	-	-
B, F [auth D], J [auth F]	prM protein	structural molecule activity protein binding binding protein dimerization activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host symbiont-mediated perturbation of host defense response symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response symbiont-mediated perturbation of host innate immune response modulation of process of another organism	viral capsid virion component virion membrane cellular anatomical structure extracellular region host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum host cell membrane other organism part host cell cytoplasm part host intracellular organelle host cell cytoplasm viral capsid virion component virion membrane cellular anatomical structure extracellular region host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum host cell membrane other organism part host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part host cell endomembrane system host intracellular region host cell endoplasmic reticulum membrane host cell nucleus viral membrane viral envelope
A, E [auth C], I [auth E]	Envelope protein E	structural molecule activity protein binding binding protein dimerization activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host symbiont-mediated perturbation of host defense response symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response symbiont-mediated perturbation of host innate immune response modulation of process of another organism	viral capsid virion component virion membrane cellular anatomical structure extracellular region host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum host cell membrane other organism part host cell cytoplasm part host intracellular organelle host cell cytoplasm viral capsid virion component virion membrane cellular anatomical structure extracellular region host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum host cell membrane other organism part host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part host cell endomembrane system host intracellular region host cell endoplasmic reticulum membrane host cell nucleus viral membrane viral envelope

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, F [auth D], J [auth F]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
B, F [auth D], J [auth F]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
B, F [auth D], J [auth F]	IPR001122	Capsid protein C, flavivirus	Domain
B, F [auth D], J [auth F]	IPR027287	Glycoprotein E, immunoglobulin-like domain, flavivirus	Domain
B, F [auth D], J [auth F]	IPR038302	Envelope glycoprotein M superfamily, flavivirus	Homologous Superfamily
B, F [auth D], J [auth F]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
B, F [auth D], J [auth F]	IPR000069	Envelope glycoprotein M, flavivirus	Domain
B, F [auth D], J [auth F]	IPR038345	Flavivirus envelope glycoprotein E, Stem/Anchor domain superfamily	Homologous Superfamily
B, F [auth D], J [auth F]	IPR038688	Flavivirus polyprotein propeptide superfamily	Homologous Superfamily
B, F [auth D], J [auth F]	IPR026470	Flavivirus envelope glycoprotein E, Stem/Anchor domain	Domain
B, F [auth D], J [auth F]	IPR011998	Envelope glycoprotein E, central and dimerisation domain, flavivirus	Domain
B, F [auth D], J [auth F]	IPR037172	Flavivirus capsid protein C superfamily	Homologous Superfamily
B, F [auth D], J [auth F]	IPR013755	Flaviviral glycoprotein E, central domain, subdomain 1	Homologous Superfamily
B, F [auth D], J [auth F]	IPR001157	Non-structural protein NS1, flavivirus	Domain
B, F [auth D], J [auth F]	IPR013756	Flaviviral glycoprotein E, central domain, subdomain 2	Homologous Superfamily
B, F [auth D], J [auth F]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
B, F [auth D], J [auth F]	IPR002535	Flavivirus polyprotein propeptide	Domain
A, E [auth C], I [auth E]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
A, E [auth C], I [auth E]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, E [auth C], I [auth E]	IPR001122	Capsid protein C, flavivirus	Domain
A, E [auth C], I [auth E]	IPR027287	Glycoprotein E, immunoglobulin-like domain, flavivirus	Domain
A, E [auth C], I [auth E]	IPR038302	Envelope glycoprotein M superfamily, flavivirus	Homologous Superfamily
A, E [auth C], I [auth E]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
A, E [auth C], I [auth E]	IPR000069	Envelope glycoprotein M, flavivirus	Domain
A, E [auth C], I [auth E]	IPR038345	Flavivirus envelope glycoprotein E, Stem/Anchor domain superfamily	Homologous Superfamily
A, E [auth C], I [auth E]	IPR038688	Flavivirus polyprotein propeptide superfamily	Homologous Superfamily
A, E [auth C], I [auth E]	IPR026470	Flavivirus envelope glycoprotein E, Stem/Anchor domain	Domain
A, E [auth C], I [auth E]	IPR011998	Envelope glycoprotein E, central and dimerisation domain, flavivirus	Domain
A, E [auth C], I [auth E]	IPR037172	Flavivirus capsid protein C superfamily	Homologous Superfamily
A, E [auth C], I [auth E]	IPR013755	Flaviviral glycoprotein E, central domain, subdomain 1	Homologous Superfamily
A, E [auth C], I [auth E]	IPR001157	Non-structural protein NS1, flavivirus	Domain
A, E [auth C], I [auth E]	IPR013756	Flaviviral glycoprotein E, central domain, subdomain 2	Homologous Superfamily
A, E [auth C], I [auth E]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
A, E [auth C], I [auth E]	IPR002535	Flavivirus polyprotein propeptide	Domain