8FBG | pdb_00008fbg

Crystal structure of NSD1 Mutant-Y1869C


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BSETe8fbgB1 A: beta barrelsX: beta-clipH: SET domain-like (From Topology)T: SET domain-likeF: SETECOD (1.6)
BAWSe8fbgB2 A: few secondary structure elementsX: Zn3Cys9 preSET domain-related (From Topology)H: Zn3Cys9 preSET domain-related (From Topology)T: Zn3Cys9 preSET domain-relatedF: AWSECOD (1.6)
ASETe8fbgA1 A: beta barrelsX: beta-clipH: SET domain-like (From Topology)T: SET domain-likeF: SETECOD (1.6)
AAWSe8fbgA2 A: few secondary structure elementsX: Zn3Cys9 preSET domain-related (From Topology)H: Zn3Cys9 preSET domain-related (From Topology)T: Zn3Cys9 preSET domain-relatedF: AWSECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00856SET domain (SET)SET domain- Family
A, B
PF17907AWS domain (AWS)AWS domainThis entry represents the AWS (associated with SET domain) domain [1]. This is a zinc binding domain. The full AWS domain contains 8 cysteines. This entry represents the N-terminal part of the domain, with the C-terminal part interwoven with the SET ...This entry represents the AWS (associated with SET domain) domain [1]. This is a zinc binding domain. The full AWS domain contains 8 cysteines. This entry represents the N-terminal part of the domain, with the C-terminal part interwoven with the SET domain.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Histone-lysine N-methyltransferase, H3 lysine-36 specific

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR006560AWS domainDomain
A, B
IPR047428Nuclear receptor-binding SET domain-containing protein 1, second PHD fingerDomain
A, B
IPR001965Zinc finger, PHD-typeDomain
A, B
IPR046341SET domain superfamilyHomologous Superfamily
A, B
IPR055197Histone-lysine N-methyltransferase NSD-like, variant PHD zinc fingerDomain
A, B
IPR001214SET domainDomain
A, B
IPR000313PWWP domainDomain
A, B
IPR047429Nuclear receptor-binding SET domain-containing protein 1, third PHD fingerDomain
A, B
IPR041306NSD, Cys-His rich domainDomain
A, B
IPR047426Histone-lysine N-methyltransferase NSD1 / NSD2, first PHD fingerDomain
A, B
IPR050777SET2 Histone-Lysine N-MethyltransferaseFamily
A, B
IPR019787Zinc finger, PHD-fingerDomain
A, B
IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
A, B
IPR047433Nuclear receptor-binding SET domain-containing protein 1, SET domainDomain
A, B
IPR047430Nuclear receptor-binding SET domain-containing protein 1, fourth PHD fingerDomain
A, B
IPR003616Post-SET domainDomain
A, B
IPR019786Zinc finger, PHD-type, conserved siteConserved Site
A, B
IPR055198Histone-lysine N-methyltransferase NSD-like, PHD zinc fingerDomain
A, B
IPR047423Nuclear receptor-binding SET domain-containing protein 1, second PWWP domainDomain
A, B
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
A, B
IPR059153Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1Domain
A, B
IPR047432Nuclear receptor-binding SET domain-containing protein 1, fifth PHD fingerDomain
A, B
IPR001841Zinc finger, RING-typeDomain