8EQM | pdb_00008eqm

Structure of a dimeric photosystem II complex acclimated to far-red light

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Y [auth k]	GTP_EFTU_D2	e8eqmk1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
I [auth K]	GTP_EFTU_D2	e8eqmK1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
X [auth i]	GTP_EFTU_D2	e8eqmi1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
H [auth I]	GTP_EFTU_D2	e8eqmI1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
W [auth h]	GTP_EFTU_D2	e8eqmh1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
G [auth H]	GTP_EFTU_D2	e8eqmH1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
V [auth f]	GTP_EFTU_D2	e8eqmf1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
F	GTP_EFTU_D2	e8eqmF1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
U [auth e]	GTP_EFTU_D2	e8eqme1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
E	GTP_EFTU_D2	e8eqmE1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
T [auth d]	GTP_EFTU_D2	e8eqmd1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
D	GTP_EFTU_D2	e8eqmD1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
S [auth c]	GTP_EFTU_D2	e8eqmc1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
C	GTP_EFTU_D2	e8eqmC1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
R [auth b]	GTP_EFTU_D2	e8eqmb1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
B	GTP_EFTU_D2	e8eqmB1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
P [auth X]	GTP_EFTU_D2	e8eqmX1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
FA [auth x]	GTP_EFTU_D2	e8eqmx1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
O [auth V]	GTP_EFTU_D2	e8eqmV1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
EA [auth v]	GTP_EFTU_D2	e8eqmv1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
N [auth U]	GTP_EFTU_D2	e8eqmU1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
DA [auth u]	GTP_EFTU_D2	e8eqmu1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
M [auth T]	GTP_EFTU_D2	e8eqmT1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
CA [auth t]	GTP_EFTU_D2	e8eqmt1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
L [auth O]	GTP_EFTU_D2	e8eqmO1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
BA [auth o]	GTP_EFTU_D2	e8eqmo1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
K [auth M]	GTP_EFTU_D2	e8eqmM1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
AA [auth m]	GTP_EFTU_D2	e8eqmm1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
Z [auth l]	GTP_EFTU_D2	e8eqml1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
J [auth L]	GTP_EFTU_D2	e8eqmL1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
Q [auth a]	GTP_EFTU_D2	e8eqma1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
A	GTP_EFTU_D2	e8eqmA1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
R [auth b]	3.10.680.10	Alpha Beta	Roll	Photosystem II CP47 reaction center protein	Photosystem II CP47 reaction center protein	CATH (utative)
B	3.10.680.10	Alpha Beta	Roll	Photosystem II CP47 reaction center protein	Photosystem II CP47 reaction center protein	CATH (utative)
Q [auth a]	1.20.85.10	Mainly Alpha	Up-down Bundle	Photosynthetic Reaction Center, subunit M	domain 1	CATH (utative)
A	1.20.85.10	Mainly Alpha	Up-down Bundle	Photosynthetic Reaction Center, subunit M	domain 1	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth K], Y [auth k]	Photosystem II reaction center protein K	-	-	-
H [auth I], X [auth i]	Photosystem II reaction center protein I	-	-	-
G [auth H], W [auth h]	Photosystem II reaction center protein H	-	-	-
F, V [auth f]	Cytochrome b559 subunit beta	-	-	-
E, U [auth e]	Cytochrome b559 subunit alpha	-	-	-
D, T [auth d]	Photosystem II D2 protein	-	-	-
C, S [auth c]	Photosystem II CP43 reaction center protein	-	-	-
B, R [auth b]	Photosystem II CP47 reaction center protein	-	-	-
FA [auth x], P [auth X]	Photosystem II reaction center X protein	-	-	-
EA [auth v], O [auth V]	Cytochrome c-550	-	-	-
DA [auth u], N [auth U]	Photosystem II 12 kDa extrinsic protein	-	-	-
CA [auth t], M [auth T]	Photosystem II reaction center protein T	-	photosynthesis metabolic process cellular process	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle photosystem II reaction center intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle photosystem II reaction center intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid plasma membrane-derived chromatophore membrane plasma membrane plasma membrane-derived chromatophore thylakoid membrane cell periphery plasma membrane-derived thylakoid membrane plasma membrane region bacterial thylakoid cytoplasm
BA [auth o], L [auth O]	Photosystem II manganese-stabilizing polypeptide	-	-	-
AA [auth m], K [auth M]	Photosystem II reaction center protein M	-	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid plasma membrane-derived chromatophore membrane protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid plasma membrane-derived chromatophore membrane plasma membrane plasma membrane-derived chromatophore thylakoid membrane cell periphery plasma membrane-derived thylakoid membrane plasma membrane region bacterial thylakoid cytoplasm
J [auth L], Z [auth l]	Photosystem II reaction center protein L	-	-	-
A, Q [auth a]	Photosystem II protein D1	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
CA [auth t], M [auth T]	IPR001743	Photosystem II PsbT	Family
CA [auth t], M [auth T]	IPR037268	Photosystem II PsbT superfamily	Homologous Superfamily
AA [auth m], K [auth M]	IPR007826	Photosystem II PsbM	Family
AA [auth m], K [auth M]	IPR037269	Photosystem II PsbM superfamily	Homologous Superfamily