Annotations: 8EDO

Cryo-EM structure of the full-length human NF1 dimer

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Ferritin	e8edoB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Neurofibromin	GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity phosphatidylethanolamine binding binding phospholipid binding lipid binding cation binding ion binding phosphatidylcholine binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity phosphatidylethanolamine binding binding phospholipid binding lipid binding cation binding ion binding phosphatidylcholine binding quaternary ammonium group binding small molecule binding	developmental process multicellular organismal process regulation of multicellular organismal development regulation of biological process regulation of developmental process blood vessel morphogenesis tube development biological regulation angiogenesis vasculature development regulation of vasculature development circulatory system development anatomical structure morphogenesis multicellular organism development tube morphogenesis developmental process multicellular organismal process regulation of multicellular organismal development regulation of biological process regulation of developmental process blood vessel morphogenesis tube development biological regulation angiogenesis vasculature development regulation of vasculature development circulatory system development anatomical structure morphogenesis multicellular organism development tube morphogenesis regulation of angiogenesis anatomical structure formation involved in morphogenesis anatomical structure development regulation of multicellular organismal process regulation of anatomical structure morphogenesis blood vessel development system development head development central nervous system development animal organ development brain development nervous system development heart development cellular developmental process astrocyte differentiation forebrain development cell development glial cell development neurogenesis astrocyte development gliogenesis cell differentiation forebrain astrocyte development glial cell differentiation cellular process forebrain astrocyte differentiation cellular response to stimulus regulation of signaling regulation of cellular process response to stimulus signaling regulation of signal transduction intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus regulation of cell communication signal transduction peripheral nervous system axon ensheathment peripheral nervous system development myelination Schwann cell development axon ensheathment ensheathment of neurons myelination in peripheral nervous system Schwann cell differentiation cellular component organization extracellular matrix organization cellular component organization or biogenesis extracellular structure organization external encapsulating structure organization positive regulation of programmed cell death regulation of apoptotic process positive regulation of biological process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death positive regulation of cellular process neuroblast proliferation negative regulation of neural precursor cell proliferation negative regulation of biological process regulation of neuroblast proliferation regulation of cell differentiation regulation of neurogenesis regulation of cell development negative regulation of neuroblast proliferation regulation of nervous system development negative regulation of neurogenesis negative regulation of cellular process negative regulation of nervous system development negative regulation of cell differentiation regulation of neural precursor cell proliferation negative regulation of cell population proliferation cell population proliferation negative regulation of developmental process generation of neurons negative regulation of cell development regulation of cell population proliferation neural precursor cell proliferation negative regulation of multicellular organismal process neuron apoptotic process positive regulation of neuron apoptotic process regulation of neuron apoptotic process system process nervous system process cognition sympathetic nervous system development autonomic nervous system development organelle organization actin cytoskeleton organization actin filament-based process cytoskeleton organization artery development artery morphogenesis homeostatic process regulation of bone remodeling tissue homeostasis regulation of tissue remodeling regulation of bone resorption bone resorption multicellular organismal-level homeostasis tissue remodeling bone remodeling anatomical structure homeostasis collagen fibril organization intracellular signaling cassette MAPK cascade regulation of cell motility regulation of blood vessel endothelial cell migration endothelial cell migration regulation of locomotion regulation of cell migration regulation of endothelial cell migration blood vessel endothelial cell migration cell migration cell motility locomotion pallium development cerebral cortex development telencephalon development brain morphogenesis forebrain morphogenesis animal organ morphogenesis negative regulation of locomotion negative regulation of cell motility negative regulation of cell migration camera-type eye morphogenesis sensory organ development eye development visual system development eye morphogenesis sensory organ morphogenesis camera-type eye development sensory system development metanephros development kidney development renal system development fibroblast proliferation regulation of fibroblast proliferation negative regulation of fibroblast proliferation response to decreased oxygen levels response to hypoxia response to stress response to oxygen levels response to abiotic stimulus pigmentation regulation of cellular component organization postsynapse organization regulation of postsynapse organization regulation of synapse organization cell junction organization regulation of synapse structure or activity synapse organization regulation of biological quality hepaticobiliary system development gland development liver development regulation of gliogenesis regulation of glial cell differentiation negative regulation of gliogenesis negative regulation of oligodendrocyte differentiation negative regulation of glial cell differentiation oligodendrocyte differentiation regulation of oligodendrocyte differentiation ossification osteoblast differentiation spinal cord development cell adhesion cell-matrix adhesion regulation of cell-matrix adhesion regulation of cell-substrate adhesion regulation of cell adhesion cell-substrate adhesion phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity response to light stimulus learning learning or memory visual learning visual behavior associative learning behavior response to radiation small GTPase-mediated signal transduction Ras protein signal transduction negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of cell communication negative regulation of response to stimulus regulation of MAPK cascade negative regulation of signal transduction negative regulation of MAPK cascade adrenal gland development endocrine system development wound healing response to wounding muscle tissue development smooth muscle tissue development tissue development endothelial cell proliferation negative regulation of endothelial cell proliferation regulation of endothelial cell proliferation regulation of epithelial cell proliferation epithelial cell proliferation negative regulation of epithelial cell proliferation	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection synapse cell junction glutamatergic synapse cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection synapse cell junction glutamatergic synapse axon membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle membraneless organelle nuclear lumen cell periphery plasma membrane nucleoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR001251	CRAL-TRIO lipid binding domain	Domain
A, B	IPR016024	Armadillo-type fold	Homologous Superfamily
A, B	IPR039360	Ras GTPase-activating protein	Family
A, B	IPR008936	Rho GTPase activation protein	Homologous Superfamily
A, B	IPR023152	Ras GTPase-activating protein, conserved site	Conserved Site
A, B	IPR054071	Neurofibromin, PH domain-like	Domain
A, B	IPR036865	CRAL-TRIO lipid binding domain superfamily	Homologous Superfamily
A, B	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, B	IPR001936	Ras GTPase-activating domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	: P21359	neurofibromatosis juvenile myelomonocytic leukemia astrocytic tumor neurofibromatosis-Noonan syndrome schwannoma neurofibromatosis, familial spinal fibrosarcoma Watson syndrome intellectual disability liposarcoma acute myeloid leukemia glioblastoma malignant glioma melanoma subependymal giant cell astrocytoma neurofibromatosis juvenile myelomonocytic leukemia astrocytic tumor neurofibromatosis-Noonan syndrome schwannoma neurofibromatosis, familial spinal fibrosarcoma Watson syndrome intellectual disability liposarcoma acute myeloid leukemia glioblastoma malignant glioma melanoma subependymal giant cell astrocytoma neurofibroma neurofibromatosis type 1 learning disability cancer papillary adenoma childhood cerebral astrocytoma lung cancer chromosome 17q11.2 deletion syndrome, 1.4Mb pilocytic astrocytoma cutaneous melanoma malignant peripheral nerve sheath tumor protoplasmic astrocytoma sarcoma mixed glioma giant cell glioblastoma juvenile pilocytic astrocytoma perineurioma phaeochromocytoma colorectal cancer pleomorphic liposarcoma adenoma spindle cell sarcoma follicular thyroid adenoma Pheochromocytoma microcystic adenoma fibrillary astrocytoma gemistocytic astrocytoma anaplastic astrocytoma osteoarthritis leukemia peripheral nervous system neoplasm malignant mesothelioma 17q11.2 microduplication syndrome epithelioid sarcoma spinal cord disease nerve sheath neoplasm breast cancer osteosarcoma cerebral astrocytoma childhood malignant schwannoma malignant ependymoma melanocytic nevus psoriasis diffuse astrocytoma extra-adrenal sympathetic paraganglioma adult malignant schwannoma hematopoietic and lymphoid system neoplasm astrocytoma (excluding glioblastoma) oligodendroglioma ovarian cancer cerebrovascular disorder lung adenocarcinoma cholangiocarcinoma congenital anemia Dedifferentiated liposarcoma endometrial carcinoma multiple endocrine neoplasia type 2A adrenal gland pheochromocytoma glioma hydrocephalus autism brain disease

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8EDO | pdb_00008edo

Cryo-EM structure of the full-length human NF1 dimer

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation