8EC0 | pdb_00008ec0

III2IV respiratory supercomplex from Saccharomyces cerevisiae cardiolipin-lacking mutant


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
V [auth a]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040292 3001831 SCOP2B (2022-06-29)
V [auth a]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040294 3001831 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040294 3001831 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040292 3001831 SCOP2B (2022-06-29)
W [auth b]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040300 3001831 SCOP2B (2022-06-29)
W [auth b]SCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040297 3001831 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040297 3001831 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLuxS/MPP-like metallohydrolase 8040300 3001831 SCOP2B (2022-06-29)
X [auth c]SCOP2B SuperfamilyISP transmembrane anchor 8040308 3000753 SCOP2B (2022-06-29)
X [auth c]SCOP2B SuperfamilyISP domain 8040307 3000233 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyISP domain 8040307 3000233 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyISP transmembrane anchor 8040308 3000753 SCOP2B (2022-06-29)
Y [auth e]SCOP2B SuperfamilySubunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040319 3000779 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilySubunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040319 3000779 SCOP2B (2022-06-29)
E [auth F]SCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040315 3000797 SCOP2B (2022-06-29)
Z [auth f]SCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040315 3000797 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyNon-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040312 3000806 SCOP2B (2022-06-29)
AA [auth g]SCOP2B SuperfamilyNon-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040312 3000806 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040318 3000770 SCOP2B (2022-06-29)
BA [auth h]SCOP2B SuperfamilyUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040318 3000770 SCOP2B (2022-06-29)
M [auth O]SCOP2B SuperfamilyCytochrome c oxidase subunit III-like 8095567 3000671 SCOP2B (2022-06-29)
O [auth Q]SCOP2B SuperfamilyCytochrome c oxidase subunit E 8095803 3001402 SCOP2B (2022-06-29)
I [auth K]SCOP2B SuperfamilyCytochrome c oxidase subunit I-like 8095115 3000653 SCOP2B (2022-06-29)
H [auth J]SCOP2B SuperfamilyTransmembrane di-heme cytochromes 8040302 3000517 SCOP2B (2022-06-29)
H [auth J]SCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040299 3000966 SCOP2B (2022-06-29)
CA [auth j]SCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8040299 3000966 SCOP2B (2022-06-29)
CA [auth j]SCOP2B SuperfamilyTransmembrane di-heme cytochromes 8040302 3000517 SCOP2B (2022-06-29)
S [auth U]SCOP2B SuperfamilyCytochrome c oxidase subunit h 8095569 3000395 SCOP2B (2022-06-29)
DA [auth l]SCOP2B SuperfamilyCytochrome c 8040304 3000815 SCOP2B (2022-06-29)
DA [auth l]SCOP2B SuperfamilyCytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 8040305 3000762 SCOP2B (2022-06-29)
J [auth L]SCOP2B SuperfamilyCytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 8040305 3000762 SCOP2B (2022-06-29)
J [auth L]SCOP2B SuperfamilyCytochrome c 8040304 3000815 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
V [auth a]Ion_transe8ec0a1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
AIon_transe8ec0A1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
W [auth b]Ion_transe8ec0b1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
BIon_transe8ec0B1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
X [auth c]Ion_transe8ec0c1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
CIon_transe8ec0C2 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
Y [auth e]Ion_transe8ec0e1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
D [auth E]Ion_transe8ec0E1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
E [auth F]Ion_transe8ec0F1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
Z [auth f]Ion_transe8ec0f1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
F [auth G]Ion_transe8ec0G1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
AA [auth g]Ion_transe8ec0g1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
G [auth H]Ion_transe8ec0H1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
BA [auth h]Ion_transe8ec0h1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
M [auth O]Ion_transe8ec0O1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
O [auth Q]Ion_transe8ec0Q1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
I [auth K]Ion_transe8ec0K1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
H [auth J]Ion_transe8ec0J1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
CA [auth j]Ion_transe8ec0j1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
U [auth W]Ion_transe8ec0W1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
S [auth U]Ion_transe8ec0U1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
R [auth T]Ion_transe8ec0T1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
Q [auth S]Ion_transe8ec0S1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
N [auth P]Ion_transe8ec0P1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
L [auth N]Ion_transe8ec0N1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
K [auth M]Ion_transe8ec0M1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
DA [auth l]Ion_transe8ec0l1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)
J [auth L]Ion_transe8ec0L2 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Ion_transECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
V [auth a]
PF05193Peptidase M16 inactive domain (Peptidase_M16_C)Peptidase M16 inactive domainPeptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. Domain
A,
V [auth a]
PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family
B,
W [auth b]
PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family
C,
X [auth c]
PF00355Rieske [2Fe-2S] domain (Rieske)Rieske [2Fe-2S] domainThe rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ...The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilises the protein [4].
Domain
D [auth E],
Y [auth e]
PF05365Cytochrome b-c1 complex subunit 9 (UCR_UQCRX_QCR9)Cytochrome b-c1 complex subunit 9- Family
E [auth F],
Z [auth f]
PF02271Ubiquinol-cytochrome C reductase complex 14kD subunit (UCR_14kD)Ubiquinol-cytochrome C reductase complex 14kD subunit- Family
AA [auth g],
F [auth G]
PF02320Ubiquinol-cytochrome C reductase hinge protein (UCR_hinge)Ubiquinol-cytochrome C reductase hinge proteinThe ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex [1]. This Pfam family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c ...The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex [1]. This Pfam family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex.
Domain
BA [auth h],
G [auth H]
PF02939UcrQ family (UcrQ)UcrQ family- Family
M [auth O]PF00510Cytochrome c oxidase subunit III (COX3)Cytochrome c oxidase subunit IIIDomain
O [auth Q]PF02284Cytochrome c oxidase subunit Va (COX5A)Cytochrome c oxidase subunit VaCytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit Va. Domain
I [auth K]PF00115Cytochrome C and Quinol oxidase polypeptide I (COX1)Cytochrome C and Quinol oxidase polypeptide I- Family
CA [auth j],
H [auth J]
PF00032Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C)Cytochrome b(C-terminal)/b6/petDDomain
CA [auth j],
H [auth J]
PF00033Cytochrome b/b6/petB (Cytochrome_B)Cytochrome b/b6/petBDomain
U [auth W]PF02936Cytochrome c oxidase subunit IV (COX4)Cytochrome c oxidase subunit IV- Family
S [auth U]PF02297Cytochrome oxidase c subunit VIb (COX6B)Cytochrome oxidase c subunit VIbCytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of the potentially heme-binding subunit IVb of the oxidase. Domain
N [auth P]PF00116Cytochrome C oxidase subunit II, periplasmic domain (COX2)Cytochrome C oxidase subunit II, periplasmic domainDomain
N [auth P]PF02790Cytochrome C oxidase subunit II, transmembrane domain (COX2_TM)Cytochrome C oxidase subunit II, transmembrane domain- Family
L [auth N]PF02238Cytochrome c oxidase subunit VII (COX7a)Cytochrome c oxidase subunit VII- Family
DA [auth l],
J [auth L]
PF02167Cytochrome C1 family (Cytochrom_C1)Cytochrome C1 family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
V [auth a]
Cytochrome b-c1 complex subunit 1, mitochondrial
B,
W [auth b]
Cytochrome b-c1 complex subunit 2, mitochondrial
C,
X [auth c]
Cytochrome b-c1 complex subunit Rieske, mitochondrial
D [auth E],
Y [auth e]
Cytochrome b-c1 complex subunit 9, mitochondrial-
E [auth F],
Z [auth f]
Cytochrome b-c1 complex subunit 7, mitochondrial-
AA [auth g],
F [auth G]
Cytochrome b-c1 complex subunit 6, mitochondrial-
BA [auth h],
G [auth H]
Cytochrome b-c1 complex subunit 8, mitochondrial
M [auth O]Cytochrome c oxidase subunit 3
O [auth Q]Cytochrome c oxidase subunit 6, mitochondrial
P [auth R]Cytochrome c oxidase subunit 9, mitochondrial
T [auth V]Cytochrome c oxidase subunit 26, mitochondrial- -
I [auth K]Cytochrome c oxidase subunit 1
CA [auth j],
H [auth J]
Cytochrome b
U [auth W]Cytochrome c oxidase subunit 5A, mitochondrial
S [auth U]Cytochrome c oxidase subunit 12, mitochondrial
R [auth T]Cytochrome c oxidase subunit 4, mitochondrial
Q [auth S]Cytochrome c oxidase subunit 13, mitochondrial
N [auth P]Cytochrome c oxidase subunit 2
L [auth N]Cytochrome c oxidase subunit 7, mitochondrial
K [auth M]Cytochrome c oxidase subunit 8, mitochondrial
DA [auth l],
J [auth L]
Cytochrome c1, heme protein, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
V [auth a]
IPR007863Peptidase M16, C-terminalDomain
A,
V [auth a]
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
A,
V [auth a]
IPR050361Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase ComplexFamily
A,
V [auth a]
IPR011765Peptidase M16, N-terminalDomain
B,
W [auth b]
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
B,
W [auth b]
IPR050361Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase ComplexFamily
B,
W [auth b]
IPR011765Peptidase M16, N-terminalDomain
B,
W [auth b]
IPR001431Peptidase M16, zinc-binding siteBinding Site
C,
X [auth c]
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
C,
X [auth c]
IPR014349Rieske iron-sulphur proteinFamily
C,
X [auth c]
IPR004192Cytochrome b-c1 complex subunit Rieske, transmembrane domainDomain
C,
X [auth c]
IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
C,
X [auth c]
IPR005805Rieske iron-sulphur protein, C-terminalDomain
C,
X [auth c]
IPR037008Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamilyHomologous Superfamily
C,
X [auth c]
IPR006317Ubiquinol-cytochrome c reductase, iron-sulphur subunitDomain
D [auth E],
Y [auth e]
IPR008027Cytochrome b-c1 complex subunit 9Family
D [auth E],
Y [auth e]
IPR036656Cytochrome b-c1 complex subunit 9 superfamilyHomologous Superfamily
E [auth F],
Z [auth f]
IPR003197Cytochrome b-c1 complex subunit 7Family
E [auth F],
Z [auth f]
IPR036544Cytochrome b-c1 complex subunit 7 superfamilyHomologous Superfamily
AA [auth g],
F [auth G]
IPR023184Ubiquinol-cytochrome C reductase hinge domainDomain
AA [auth g],
F [auth G]
IPR036811Ubiquinol-cytochrome C reductase hinge domain superfamilyHomologous Superfamily
BA [auth h],
G [auth H]
IPR004205Cytochrome b-c1 complex subunit 8Family
BA [auth h],
G [auth H]
IPR036642Cytochrome b-c1 complex subunit 8 superfamilyHomologous Superfamily
M [auth O]IPR035973Cytochrome c oxidase subunit III-like superfamilyHomologous Superfamily
M [auth O]IPR000298Cytochrome c oxidase subunit III-likeDomain
M [auth O]IPR033945Cytochrome c oxidase subunit III domainDomain
M [auth O]IPR013833Cytochrome c oxidase, subunit III, 4-helical bundleHomologous Superfamily
M [auth O]IPR024791Cytochrome c oxidase subunit IIIFamily
O [auth Q]IPR003204Cytochrome c oxidase, subunit Va/VIFamily
O [auth Q]IPR036545Cytochrome c oxidase, subunit Va/VI superfamilyHomologous Superfamily
P [auth R]IPR014368Cytochrome c oxidase, subunit VIIa, fungalFamily
I [auth K]IPR036927Cytochrome c oxidase-like, subunit I superfamilyHomologous Superfamily
I [auth K]IPR000883Cytochrome c oxidase subunit IFamily
I [auth K]IPR023615Cytochrome c oxidase, subunit I, copper-binding siteBinding Site
I [auth K]IPR023616Cytochrome c oxidase-like, subunit I domainDomain
I [auth K]IPR033944Cytochrome c oxidase subunit I domainDomain
CA [auth j],
H [auth J]
IPR036150Cytochrome b/b6, C-terminal domain superfamilyHomologous Superfamily
CA [auth j],
H [auth J]
IPR027387Cytochrome b/b6-like domain superfamilyHomologous Superfamily
CA [auth j],
H [auth J]
IPR048260Cytochrome b/b6, C-terminal domain, eukaryotic/bacterialDomain
CA [auth j],
H [auth J]
IPR016174Di-haem cytochrome, transmembraneHomologous Superfamily
CA [auth j],
H [auth J]
IPR005798Cytochrome b/b6, C-terminalDomain
CA [auth j],
H [auth J]
IPR048259Cytochrome b/b6, N-terminal domain, eukaryotic/bacterialDomain
CA [auth j],
H [auth J]
IPR030689Cytochrome bFamily
CA [auth j],
H [auth J]
IPR005797Cytochrome b/b6, N-terminal domainDomain
U [auth W]IPR004203Cytochrome c oxidase subunit IV familyFamily
U [auth W]IPR036639Cytochrome c oxidase subunit IV superfamilyHomologous Superfamily
S [auth U]IPR003213Cytochrome c oxidase, subunit VIbFamily
S [auth U]IPR036549Cytochrome c oxidase subunit 6B/Cytochrome c oxidase assembly factor 6-like superfamilyHomologous Superfamily
S [auth U]IPR048280Cytochrome oxidase c subunit VIb-likeFamily
R [auth T]IPR002124Cytochrome c oxidase, subunit VbFamily
R [auth T]IPR036972Cytochrome c oxidase, subunit Vb superfamilyHomologous Superfamily
Q [auth S]IPR018507Cytochrome c oxidase, subunit VIa, conserved siteConserved Site
Q [auth S]IPR036418Cytochrome c oxidase, subunit VIa superfamilyHomologous Superfamily
Q [auth S]IPR001349Cytochrome c oxidase, subunit VIaFamily
N [auth P]IPR011759Cytochrome C oxidase subunit II, transmembrane domainDomain
N [auth P]IPR036257Cytochrome C oxidase subunit II, transmembrane domain superfamilyHomologous Superfamily
N [auth P]IPR034210Cytochrome c oxidase subunit 2, C-terminalDomain
N [auth P]IPR045187Cytochrome c/quinol oxidase subunit IIFamily
N [auth P]IPR002429Cytochrome c oxidase subunit II-like C-terminalDomain
N [auth P]IPR008972CupredoxinHomologous Superfamily
N [auth P]IPR001505Copper centre Cu(A)Binding Site
N [auth P]IPR014222Cytochrome c oxidase, subunit IIDomain
L [auth N]IPR014367Cytochrome c oxidase subunit VII, budding yeastFamily
L [auth N]IPR039297Cytochrome c oxidase subunit VIIFamily
K [auth M]IPR036636Cytochrome c oxidase subunit VIIc superfamilyHomologous Superfamily
K [auth M]IPR004202Cytochrome c oxidase subunit VIIcFamily
DA [auth l],
J [auth L]
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
DA [auth l],
J [auth L]
IPR002326Cytochrome c1Family
DA [auth l],
J [auth L]
IPR009056Cytochrome c-like domainDomain
DA [auth l],
J [auth L]
IPR021157Cytochrome c1, transmembrane anchor, C-terminalHomologous Superfamily