III2IV respiratory supercomplex from Saccharomyces cerevisiae cardiolipin-lacking mutant
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| V [auth a] | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8040292 | 3001831 | SCOP2B (2022-06-29) |
| V [auth a] | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8040294 | 3001831 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8040294 | 3001831 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8040292 | 3001831 | SCOP2B (2022-06-29) |
| W [auth b] | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8040300 | 3001831 | SCOP2B (2022-06-29) |
| W [auth b] | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8040297 | 3001831 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8040297 | 3001831 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8040300 | 3001831 | SCOP2B (2022-06-29) |
| X [auth c] | SCOP2B Superfamily | ISP transmembrane anchor | 8040308 | 3000753 | SCOP2B (2022-06-29) |
| X [auth c] | SCOP2B Superfamily | ISP domain | 8040307 | 3000233 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | ISP domain | 8040307 | 3000233 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | ISP transmembrane anchor | 8040308 | 3000753 | SCOP2B (2022-06-29) |
| Y [auth e] | SCOP2B Superfamily | Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8040319 | 3000779 | SCOP2B (2022-06-29) |
| D [auth E] | SCOP2B Superfamily | Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8040319 | 3000779 | SCOP2B (2022-06-29) |
| E [auth F] | SCOP2B Superfamily | 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8040315 | 3000797 | SCOP2B (2022-06-29) |
| Z [auth f] | SCOP2B Superfamily | 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8040315 | 3000797 | SCOP2B (2022-06-29) |
| F [auth G] | SCOP2B Superfamily | Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8040312 | 3000806 | SCOP2B (2022-06-29) |
| AA [auth g] | SCOP2B Superfamily | Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8040312 | 3000806 | SCOP2B (2022-06-29) |
| G [auth H] | SCOP2B Superfamily | Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8040318 | 3000770 | SCOP2B (2022-06-29) |
| BA [auth h] | SCOP2B Superfamily | Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8040318 | 3000770 | SCOP2B (2022-06-29) |
| M [auth O] | SCOP2B Superfamily | Cytochrome c oxidase subunit III-like | 8095567 | 3000671 | SCOP2B (2022-06-29) |
| O [auth Q] | SCOP2B Superfamily | Cytochrome c oxidase subunit E | 8095803 | 3001402 | SCOP2B (2022-06-29) |
| I [auth K] | SCOP2B Superfamily | Cytochrome c oxidase subunit I-like | 8095115 | 3000653 | SCOP2B (2022-06-29) |
| H [auth J] | SCOP2B Superfamily | Transmembrane di-heme cytochromes | 8040302 | 3000517 | SCOP2B (2022-06-29) |
| H [auth J] | SCOP2B Superfamily | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8040299 | 3000966 | SCOP2B (2022-06-29) |
| CA [auth j] | SCOP2B Superfamily | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8040299 | 3000966 | SCOP2B (2022-06-29) |
| CA [auth j] | SCOP2B Superfamily | Transmembrane di-heme cytochromes | 8040302 | 3000517 | SCOP2B (2022-06-29) |
| S [auth U] | SCOP2B Superfamily | Cytochrome c oxidase subunit h | 8095569 | 3000395 | SCOP2B (2022-06-29) |
| DA [auth l] | SCOP2B Superfamily | Cytochrome c | 8040304 | 3000815 | SCOP2B (2022-06-29) |
| DA [auth l] | SCOP2B Superfamily | Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor | 8040305 | 3000762 | SCOP2B (2022-06-29) |
| J [auth L] | SCOP2B Superfamily | Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor | 8040305 | 3000762 | SCOP2B (2022-06-29) |
| J [auth L] | SCOP2B Superfamily | Cytochrome c | 8040304 | 3000815 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| V [auth a] | Ion_trans | e8ec0a1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| A | Ion_trans | e8ec0A1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| W [auth b] | Ion_trans | e8ec0b1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| B | Ion_trans | e8ec0B1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| X [auth c] | Ion_trans | e8ec0c1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| C | Ion_trans | e8ec0C2 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| Y [auth e] | Ion_trans | e8ec0e1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| D [auth E] | Ion_trans | e8ec0E1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| E [auth F] | Ion_trans | e8ec0F1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| Z [auth f] | Ion_trans | e8ec0f1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| F [auth G] | Ion_trans | e8ec0G1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| AA [auth g] | Ion_trans | e8ec0g1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| G [auth H] | Ion_trans | e8ec0H1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| BA [auth h] | Ion_trans | e8ec0h1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| M [auth O] | Ion_trans | e8ec0O1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| O [auth Q] | Ion_trans | e8ec0Q1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| I [auth K] | Ion_trans | e8ec0K1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| H [auth J] | Ion_trans | e8ec0J1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| CA [auth j] | Ion_trans | e8ec0j1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| U [auth W] | Ion_trans | e8ec0W1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| S [auth U] | Ion_trans | e8ec0U1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| R [auth T] | Ion_trans | e8ec0T1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| Q [auth S] | Ion_trans | e8ec0S1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| N [auth P] | Ion_trans | e8ec0P1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| L [auth N] | Ion_trans | e8ec0N1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| K [auth M] | Ion_trans | e8ec0M1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| DA [auth l] | Ion_trans | e8ec0l1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
| J [auth L] | Ion_trans | e8ec0L2 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| W [auth b] | 3.30.830.10 | Alpha Beta | 2-Layer Sandwich | Cytochrome Bc1 Complex | Chain A, domain 1 | CATH (utative) |
| B | 3.30.830.10 | Alpha Beta | 2-Layer Sandwich | Cytochrome Bc1 Complex | Chain A, domain 1 | CATH (utative) |
| I [auth K] | 1.20.210.10 | Mainly Alpha | Up-down Bundle | Cytochrome C Oxidase | Chain A | CATH (utative) |
| H [auth J] | 1.20.810.10 | Mainly Alpha | Up-down Bundle | Cytochrome Bc1 Complex | Chain C | CATH (utative) |
| CA [auth j] | 1.20.810.10 | Mainly Alpha | Up-down Bundle | Cytochrome Bc1 Complex | Chain C | CATH (utative) |
| N [auth P] | 2.60.40.420 | Mainly Beta | Sandwich | Immunoglobulin-like | Cupredoxins - blue copper proteins | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A, V [auth a] | PF05193 | Peptidase M16 inactive domain (Peptidase_M16_C) | Peptidase M16 inactive domain | Peptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. | Domain |
| A, V [auth a] | PF00675 | Insulinase (Peptidase family M16) (Peptidase_M16) | Insulinase (Peptidase family M16) | - | Family |
| B, W [auth b] | PF00675 | Insulinase (Peptidase family M16) (Peptidase_M16) | Insulinase (Peptidase family M16) | - | Family |
| C, X [auth c] | PF00355 | Rieske [2Fe-2S] domain (Rieske) | Rieske [2Fe-2S] domain | The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ... | Domain |
| D [auth E], Y [auth e] | PF05365 | Cytochrome b-c1 complex subunit 9 (UCR_UQCRX_QCR9) | Cytochrome b-c1 complex subunit 9 | - | Family |
| E [auth F], Z [auth f] | PF02271 | Ubiquinol-cytochrome C reductase complex 14kD subunit (UCR_14kD) | Ubiquinol-cytochrome C reductase complex 14kD subunit | - | Family |
| AA [auth g], F [auth G] | PF02320 | Ubiquinol-cytochrome C reductase hinge protein (UCR_hinge) | Ubiquinol-cytochrome C reductase hinge protein | The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex [1]. This Pfam family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c ... | Domain |
| BA [auth h], G [auth H] | PF02939 | UcrQ family (UcrQ) | UcrQ family | - | Family |
| M [auth O] | PF00510 | Cytochrome c oxidase subunit III (COX3) | Cytochrome c oxidase subunit III | Domain | |
| O [auth Q] | PF02284 | Cytochrome c oxidase subunit Va (COX5A) | Cytochrome c oxidase subunit Va | Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit Va. | Domain |
| I [auth K] | PF00115 | Cytochrome C and Quinol oxidase polypeptide I (COX1) | Cytochrome C and Quinol oxidase polypeptide I | - | Family |
| CA [auth j], H [auth J] | PF00032 | Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C) | Cytochrome b(C-terminal)/b6/petD | Domain | |
| CA [auth j], H [auth J] | PF00033 | Cytochrome b/b6/petB (Cytochrome_B) | Cytochrome b/b6/petB | Domain | |
| U [auth W] | PF02936 | Cytochrome c oxidase subunit IV (COX4) | Cytochrome c oxidase subunit IV | - | Family |
| S [auth U] | PF02297 | Cytochrome oxidase c subunit VIb (COX6B) | Cytochrome oxidase c subunit VIb | Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of the potentially heme-binding subunit IVb of the oxidase. | Domain |
| N [auth P] | PF00116 | Cytochrome C oxidase subunit II, periplasmic domain (COX2) | Cytochrome C oxidase subunit II, periplasmic domain | Domain | |
| N [auth P] | PF02790 | Cytochrome C oxidase subunit II, transmembrane domain (COX2_TM) | Cytochrome C oxidase subunit II, transmembrane domain | - | Family |
| L [auth N] | PF02238 | Cytochrome c oxidase subunit VII (COX7a) | Cytochrome c oxidase subunit VII | - | Family |
| DA [auth l], J [auth L] | PF02167 | Cytochrome C1 family (Cytochrom_C1) | Cytochrome C1 family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Electron transport chain complex IV (cytochrome c oxidase) | Respiratory supercomplexes III-IV |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |














