8DUR | pdb_00008dur

Crystal structure of apo protein arginine N-methyltransferase 1 (PRMT1) from Naegleria fowleri

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PHF5	e8durA1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (v294.1)
B	PHF5	e8durB1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PHF5	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF13847	Methyltransferase domain (Methyltransf_31)	Methyltransferase domain	This family appears to have methyltransferase activity.	Domain
A, B	PF22528	Arginine methyltransferase oligomerization subdomain (PRMT_C)	Arginine methyltransferase oligomerization subdomain	This entry represents a domain found C-terminal in protein arginine methyltransferases. This domain is involved in oligomerisation.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Protein arginine N-methyltransferase 1 (PRMT1)	amidine-lyase activity glutathione specific gamma-glutamylcyclotransferase activity lyase activity catalytic activity carbon-nitrogen lyase activity catalytic activity, acting on a protein transferase activity, transferring one-carbon groups protein methyltransferase activity histone modifying activity transferase activity methyltransferase activity histone methyltransferase activity RNA binding binding amidine-lyase activity glutathione specific gamma-glutamylcyclotransferase activity lyase activity catalytic activity carbon-nitrogen lyase activity catalytic activity, acting on a protein transferase activity, transferring one-carbon groups protein methyltransferase activity histone modifying activity transferase activity methyltransferase activity histone methyltransferase activity RNA binding binding nucleic acid binding S-adenosylmethionine-dependent methyltransferase activity protein-arginine N-methyltransferase activity protein-arginine omega-N asymmetric methyltransferase activity arginine N-methyltransferase activity N-methyltransferase activity	methylation metabolic process cellular process sulfur compound catabolic process glutathione metabolic process glutathione catabolic process catabolic process modified amino acid metabolic process sulfur compound metabolic process modified amino acid catabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR015947	PUA-like superfamily	Homologous Superfamily
A, B	IPR006840	Glutathione-specific gamma-glutamylcyclotransferase	Family
A, B	IPR025799	Protein arginine N-methyltransferase	Family
A, B	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
A, B	IPR036974	PUA domain superfamily	Homologous Superfamily
A, B	IPR036568	Gamma-glutamyl cyclotransferase-like superfamily	Homologous Superfamily
A, B	IPR002478	PUA domain	Domain
A, B	IPR055135	Protein arginine N-methyltransferase domain	Domain
A, B	IPR041698	Methyltransferase domain 25	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.