8DMK

Cryo-EM reveals the molecular basis of laminin polymerization and LN-lamininopathies

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00055	e8dmkA2	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF00055	ECOD (1.6)
A	PF00053	e8dmkA1	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: PF00053	ECOD (1.6)
B	PF00055	e8dmkB1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF00055	ECOD (1.6)
B	PF00053	e8dmkB2	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: PF00053	ECOD (1.6)
C [auth G]	PF00055	e8dmkG2	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF00055	ECOD (1.6)
C [auth G]	PF00053	e8dmkG1	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: PF00053	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00053	Laminin EGF domain (Laminin_EGF)	Laminin EGF domain	This family is like Pfam:PF00008 but has 8 conserved cysteines instead of six.	Domain
A	PF00055	Laminin N-terminal (Domain VI) (Laminin_N)	Laminin N-terminal (Domain VI)	-	Domain
B	PF00053	Laminin EGF domain (Laminin_EGF)	Laminin EGF domain	This family is like Pfam:PF00008 but has 8 conserved cysteines instead of six.	Domain
B	PF00055	Laminin N-terminal (Domain VI) (Laminin_N)	Laminin N-terminal (Domain VI)	-	Domain
C [auth G]	PF00053	Laminin EGF domain (Laminin_EGF)	Laminin EGF domain	This family is like Pfam:PF00008 but has 8 conserved cysteines instead of six.	Domain
C [auth G]	PF00055	Laminin N-terminal (Domain VI) (Laminin_N)	Laminin N-terminal (Domain VI)	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Laminin subunit alpha-1	glycosphingolipid binding binding sphingolipid binding lipid binding glycolipid binding carbohydrate derivative binding protein binding signaling receptor binding structural molecule activity extracellular matrix structural constituent	developmental process anatomical structure development tissue development anatomical structure morphogenesis animal organ development animal organ morphogenesis tissue morphogenesis epithelium development morphogenesis of an epithelium morphogenesis of an epithelial sheet regulation of biological process regulation of cellular process regulation of developmental process cellular developmental process developmental process anatomical structure development tissue development anatomical structure morphogenesis animal organ development animal organ morphogenesis tissue morphogenesis epithelium development morphogenesis of an epithelium morphogenesis of an epithelial sheet regulation of biological process regulation of cellular process regulation of developmental process cellular developmental process biological regulation positive regulation of biological process regulation of cell differentiation muscle cell differentiation positive regulation of muscle cell differentiation muscle structure development positive regulation of developmental process regulation of muscle cell differentiation positive regulation of cell differentiation cell differentiation cellular process positive regulation of cellular process multicellular organismal process sensory organ development eye development visual system development multicellular organism development camera-type eye development sensory system development system development retina development in camera-type eye branching morphogenesis of an epithelial tube respiratory tube development tube morphogenesis lung morphogenesis lung development respiratory system development epithelial tube morphogenesis tube development morphogenesis of a branching structure epithelial tube branching involved in lung morphogenesis morphogenesis of a branching epithelium polarized epithelial cell differentiation establishment of monopolar cell polarity establishment or maintenance of monopolar cell polarity establishment or maintenance of cell polarity epithelial cell differentiation morphogenesis of a polarized epithelium establishment or maintenance of apical/basal cell polarity establishment or maintenance of bipolar cell polarity establishment of epithelial cell apical/basal polarity establishment of cell polarity establishment or maintenance of epithelial cell apical/basal polarity establishment of apical/basal cell polarity establishment of epithelial cell polarity regulation of cell motility regulation of locomotion regulation of cell migration cell migration cell motility locomotion cell adhesion positive regulation of cell adhesion regulation of cell adhesion cellular response to stimulus positive regulation of cell communication regulation of integrin-mediated signaling pathway positive regulation of signal transduction response to stimulus signaling regulation of signal transduction cell communication positive regulation of response to stimulus positive regulation of integrin-mediated signaling pathway signal transduction regulation of signaling integrin-mediated signaling pathway cell surface receptor signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of signaling protein phosphorylation organonitrogen compound metabolic process phosphorylation cellular metabolic process primary metabolic process organic substance metabolic process macromolecule modification phosphate-containing compound metabolic process metabolic process protein metabolic process macromolecule metabolic process protein modification process phosphorus metabolic process axonogenesis cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis cellular component organization or biogenesis plasma membrane bounded cell projection organization axon guidance nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons neuron projection guidance neuron development regulation of embryonic development regulation of multicellular organismal development embryo development regulation of multicellular organismal process regulation of cellular component organization extracellular matrix organization regulation of basement membrane organization regulation of extracellular matrix organization extracellular structure organization external encapsulating structure organization basement membrane organization gland development branching involved in salivary gland morphogenesis salivary gland development gland morphogenesis salivary gland morphogenesis exocrine system development blood vessel morphogenesis retina vasculature development in camera-type eye retina vasculature morphogenesis in camera-type eye vasculature development circulatory system development retinal blood vessel morphogenesis blood vessel development	laminin complex basement membrane cell periphery extracellular matrix protein-containing complex external encapsulating structure collagen-containing extracellular matrix cellular anatomical entity laminin-1 complex membrane cell-cell junction anchoring junction cell junction extracellular region laminin complex basement membrane cell periphery extracellular matrix protein-containing complex external encapsulating structure collagen-containing extracellular matrix cellular anatomical entity laminin-1 complex membrane cell-cell junction anchoring junction cell junction extracellular region protein complex involved in cell-matrix adhesion protein complex involved in cell adhesion extracellular space laminin-3 complex
B	Laminin subunit beta-1	structural molecule activity extracellular matrix structural constituent	developmental process regulation of biological process regulation of cellular process regulation of developmental process cellular developmental process biological regulation positive regulation of biological process regulation of cell differentiation muscle cell differentiation positive regulation of muscle cell differentiation muscle structure development positive regulation of developmental process regulation of muscle cell differentiation positive regulation of cell differentiation cell differentiation developmental process regulation of biological process regulation of cellular process regulation of developmental process cellular developmental process biological regulation positive regulation of biological process regulation of cell differentiation muscle cell differentiation positive regulation of muscle cell differentiation muscle structure development positive regulation of developmental process regulation of muscle cell differentiation positive regulation of cell differentiation cell differentiation anatomical structure development cellular process positive regulation of cellular process multicellular organismal process formation of primary germ layer embryonic morphogenesis tissue development embryo development gastrulation anatomical structure morphogenesis multicellular organism development endoderm development anatomical structure formation involved in morphogenesis endoderm formation endodermal cell differentiation cell adhesion substrate adhesion-dependent cell spreading cell-substrate adhesion cell population proliferation positive regulation of cell population proliferation positive regulation of epithelial cell proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation positive regulation of cell adhesion regulation of cell adhesion cellular response to stimulus positive regulation of cell communication regulation of integrin-mediated signaling pathway positive regulation of signal transduction response to stimulus signaling regulation of signal transduction cell communication positive regulation of response to stimulus positive regulation of integrin-mediated signaling pathway signal transduction regulation of signaling integrin-mediated signaling pathway cell surface receptor signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of signaling odontogenesis animal organ development animal organ morphogenesis positive regulation of locomotion regulation of cell motility positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration cell migration cell motility locomotion forebrain development glial cell migration telencephalon glial cell migration cerebral cortex development neurogenesis cell-cell adhesion telencephalon cell migration forebrain cell migration gliogenesis system development cerebral cortex cell migration head development neuronal-glial interaction involved in cerebral cortex radial glia guided migration brain development nervous system development cerebral cortex radially oriented cell migration pallium development central nervous system development cerebral cortex radial glia-guided migration telencephalon development regulation of cellular component organization extracellular matrix organization cellular component organization cellular component organization or biogenesis regulation of basement membrane organization regulation of extracellular matrix organization extracellular structure organization external encapsulating structure organization basement membrane organization plasma membrane bounded cell projection organization cell projection organization cell development neuron projection development generation of neurons neuron differentiation neuron development	laminin complex basement membrane cell periphery extracellular matrix protein-containing complex external encapsulating structure collagen-containing extracellular matrix cellular anatomical entity laminin-1 complex extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region laminin complex basement membrane cell periphery extracellular matrix protein-containing complex external encapsulating structure collagen-containing extracellular matrix cellular anatomical entity laminin-1 complex extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle laminin-10 complex laminin-2 complex intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen endoplasmic reticulum cytoplasm perinuclear region of cytoplasm protein complex involved in cell-matrix adhesion protein complex involved in cell adhesion laminin-8 complex
C [auth G]	Laminin subunit gamma-1	structural molecule activity extracellular matrix structural constituent	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis developmental process regulation of biological process regulation of cellular process regulation of developmental process cellular developmental process biological regulation positive regulation of biological process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis developmental process regulation of biological process regulation of cellular process regulation of developmental process cellular developmental process biological regulation positive regulation of biological process regulation of cell differentiation muscle cell differentiation positive regulation of muscle cell differentiation muscle structure development positive regulation of developmental process regulation of muscle cell differentiation positive regulation of cell differentiation cell differentiation anatomical structure development positive regulation of cellular process cell adhesion substrate adhesion-dependent cell spreading cell-substrate adhesion endoderm development tissue development cell population proliferation positive regulation of cell population proliferation positive regulation of epithelial cell proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation cell junction organization cell junction assembly cell-substrate junction assembly cell-substrate junction organization hemidesmosome assembly cellular component disassembly extracellular matrix disassembly extracellular matrix organization extracellular structure organization external encapsulating structure organization cell migration cell motility positive regulation of cell adhesion regulation of cell adhesion cellular response to stimulus positive regulation of cell communication regulation of integrin-mediated signaling pathway positive regulation of signal transduction response to stimulus signaling regulation of signal transduction cell communication positive regulation of response to stimulus positive regulation of integrin-mediated signaling pathway signal transduction regulation of signaling integrin-mediated signaling pathway cell surface receptor signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of signaling multicellular organismal process maintenance of blood-brain barrier multicellular organismal-level homeostasis homeostatic process anatomical structure homeostasis tissue homeostasis regulation of cellular component organization regulation of basement membrane organization regulation of extracellular matrix organization basement membrane organization	laminin complex basement membrane cell periphery extracellular matrix protein-containing complex external encapsulating structure collagen-containing extracellular matrix cellular anatomical entity laminin-1 complex extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region laminin complex basement membrane cell periphery extracellular matrix protein-containing complex external encapsulating structure collagen-containing extracellular matrix cellular anatomical entity laminin-1 complex extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle laminin-10 complex intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen endoplasmic reticulum cytoplasm laminin-11 complex protein complex involved in cell-matrix adhesion protein complex involved in cell adhesion

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008211	Laminin, N-terminal	Domain
A	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A	IPR002049	Laminin-type EGF domain	Domain
A	IPR010307	Laminin domain II	Domain
A	IPR000742	EGF-like domain	Domain
A	IPR001791	Laminin G domain	Domain
A	IPR009254	Laminin alpha, domain I	Domain
A	IPR000034	Laminin IV	Domain
B	IPR008211	Laminin, N-terminal	Domain
B	IPR013015	Laminin IV type B	Domain
B	IPR002049	Laminin-type EGF domain	Domain
B	IPR000742	EGF-like domain	Domain
C [auth G]	IPR008211	Laminin, N-terminal	Domain
C [auth G]	IPR002049	Laminin-type EGF domain	Domain
C [auth G]	IPR000742	EGF-like domain	Domain
C [auth G]	IPR000034	Laminin IV	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: P07942	ulcerative colitis lissencephaly spectrum disorders cobblestone lissencephaly without muscular or ocular involvement coloboma endometriosis pulmonary fibrosis hydrocephalus intellectual disability Malformations of Cortical Development acute myeloid leukemia malignant pancreatic neoplasm nasopharyngeal carcinoma Crohn disease pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia diabetes mellitus ulcerative colitis lissencephaly spectrum disorders cobblestone lissencephaly without muscular or ocular involvement coloboma endometriosis pulmonary fibrosis hydrocephalus intellectual disability Malformations of Cortical Development acute myeloid leukemia malignant pancreatic neoplasm nasopharyngeal carcinoma Crohn disease pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia diabetes mellitus psoriasis Sjogren syndrome glioblastoma idiopathic interstitial pneumonia juvenile dermatomyositis lung adenocarcinoma malignant glioma medulloblastoma breast cancer oligodendroglioma pancreatic ductal adenocarcinoma cystic fibrosis pilocytic astrocytoma Duchenne muscular dystrophy pterygium inflammatory bowel disease large cell medulloblastoma lung carcinoma malignant mesothelioma autism myopathy cerebrovascular disorder ovarian cancer pancreatic intraductal papillary-mucinous neoplasm dermatomyositis pituitary cancer Emery-Dreifuss muscular dystrophy gastric carcinoma
C [auth G]	Pharos: P11047	Marfan syndrome aortic disease colorectal cancer prostate cancer malignant glioma nasopharyngeal carcinoma ovarian cancer acne plasma cell myeloma atypical teratoid rhabdoid tumor Prostatic Neoplasms colorectal adenoma Duchenne muscular dystrophy Fuchs' endothelial dystrophy invasive ductal breast carcinoma Marfan syndrome aortic disease colorectal cancer prostate cancer malignant glioma nasopharyngeal carcinoma ovarian cancer acne plasma cell myeloma atypical teratoid rhabdoid tumor Prostatic Neoplasms colorectal adenoma Duchenne muscular dystrophy Fuchs' endothelial dystrophy invasive ductal breast carcinoma lung cancer malignant mesothelioma medulloblastoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma primitive neuroectodermal tumor breast carcinoma subependymal giant cell astrocytoma ductal breast carcinoma in situ gastric carcinoma juvenile dermatomyositis malignant ependymoma malignant pancreatic neoplasm myopathy osteosarcoma pilocytic astrocytoma astrocytic tumor breast fibroadenoma ulcerative colitis dermatomyositis Emery-Dreifuss muscular dystrophy glioblastoma large cell medulloblastoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.