8D9S | pdb_00008d9s

AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated wide membrane tubes, centered on beta-Arf1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
WA [auth w]SCOP2B SuperfamilySNARE-like 8082711 3001113 SCOP2B (2022-06-29)
S [auth t]SCOP2B SuperfamilySNARE-like 8082711 3001113 SCOP2B (2022-06-29)
MA [auth v]SCOP2B SuperfamilySNARE-like 8082711 3001113 SCOP2B (2022-06-29)
I [auth S]SCOP2B SuperfamilySNARE-like 8082711 3001113 SCOP2B (2022-06-29)
GB [auth x]SCOP2B SuperfamilySNARE-like 8082711 3001113 SCOP2B (2022-06-29)
CA [auth u]SCOP2B SuperfamilySNARE-like 8082711 3001113 SCOP2B (2022-06-29)
VA [auth m]SCOP2B Superfamilymu adaptin domain-like 8083652 3000810 SCOP2B (2022-06-29)
R [auth j]SCOP2B Superfamilymu adaptin domain-like 8083652 3000810 SCOP2B (2022-06-29)
LA [auth l]SCOP2B Superfamilymu adaptin domain-like 8083652 3000810 SCOP2B (2022-06-29)
H [auth M]SCOP2B Superfamilymu adaptin domain-like 8083652 3000810 SCOP2B (2022-06-29)
FB [auth n]SCOP2B Superfamilymu adaptin domain-like 8083652 3000810 SCOP2B (2022-06-29)
BA [auth k]SCOP2B Superfamilymu adaptin domain-like 8083652 3000810 SCOP2B (2022-06-29)
Z [auth T]SCOP2B SuperfamilyARM repeat-like 8078176 3000116 SCOP2B (2022-06-29)
TA [auth V]SCOP2B SuperfamilyARM repeat-like 8078176 3000116 SCOP2B (2022-06-29)
P [auth R]SCOP2B SuperfamilyARM repeat-like 8078176 3000116 SCOP2B (2022-06-29)
JA [auth U]SCOP2B SuperfamilyARM repeat-like 8078176 3000116 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyARM repeat-like 8078176 3000116 SCOP2B (2022-06-29)
DB [auth W]SCOP2B SuperfamilyARM repeat-like 8078176 3000116 SCOP2B (2022-06-29)
Y [auth D]SCOP2B SuperfamilyARM repeat-like 8082787 3000116 SCOP2B (2022-06-29)
SA [auth F]SCOP2B SuperfamilyARM repeat-like 8082787 3000116 SCOP2B (2022-06-29)
O [auth A]SCOP2B SuperfamilyARM repeat-like 8082787 3000116 SCOP2B (2022-06-29)
IA [auth E]SCOP2B SuperfamilyARM repeat-like 8082787 3000116 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyARM repeat-like 8082787 3000116 SCOP2B (2022-06-29)
CB [auth I]SCOP2B SuperfamilyARM repeat-like 8082787 3000116 SCOP2B (2022-06-29)
ZA [auth d]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
YA [auth Q]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
XA [auth 6]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
V [auth a]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
U [auth K]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
T [auth 3]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
PA [auth c]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
OA [auth P]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
NA [auth 5]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
L [auth X]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
K [auth J]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
J [auth Z]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
HB [auth 7]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
FA [auth b]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
EA [auth O]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
DA [auth 4]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
B [auth H]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
A [auth C]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
WA [auth w]e8d9sw1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
S [auth t]e8d9st1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
MA [auth v]e8d9sv1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
I [auth S]e8d9sS1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
GB [auth x]e8d9sx1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
CA [auth u]e8d9su1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
VA [auth m]e8d9sm1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
R [auth j]e8d9sj1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
LA [auth l]e8d9sl1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
H [auth M]e8d9sM1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
FB [auth n]e8d9sn1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
BA [auth k]e8d9sk1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
Z [auth T]e8d9sT1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
TA [auth V]e8d9sV1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
P [auth R]e8d9sR1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
JA [auth U]e8d9sU1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
F [auth G]e8d9sG1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
DB [auth W]e8d9sW1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
Y [auth D]e8d9sD1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
SA [auth F]e8d9sF1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
O [auth A]e8d9sA1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
IA [auth E]e8d9sE1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
E [auth B]e8d9sB1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
CB [auth I]e8d9sI1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
W [auth p]e8d9sp1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
QA [auth r]e8d9sr1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
M [auth o]e8d9so1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
GA [auth q]e8d9sq1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
C [auth N]e8d9sN1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
AB [auth s]e8d9ss1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
ZA [auth d]e8d9sd1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
YA [auth Q]e8d9sQ1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
XA [auth 6]e8d9s61 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
V [auth a]e8d9sa1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
U [auth K]e8d9sK1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
T [auth 3]e8d9s31 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
PA [auth c]e8d9sc1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
OA [auth P]e8d9sP1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
NA [auth 5]e8d9s51 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
L [auth X]e8d9sX1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
K [auth J]e8d9sJ1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
J [auth Z]e8d9sZ1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
HB [auth 7]e8d9s71 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
FA [auth b]e8d9sb1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
EA [auth O]e8d9sO1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
DA [auth 4]e8d9s41 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
B [auth H]e8d9sH1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)
A [auth C]e8d9sC1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Carb_anhydraseF:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chainDomain
PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chainDomain
PF00928Adaptor complexes medium subunit family (Adap_comp_sub)Adaptor complexes medium subunit family- Family
PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chainDomain
PF01602Adaptin N terminal region (Adaptin_N)Adaptin N terminal region- Repeat
PF00025ADP-ribosylation factor family (Arf)ADP-ribosylation factor familyPfam combines a number of different Prosite families together Domain
PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chainDomain
PF00928Adaptor complexes medium subunit family (Adap_comp_sub)Adaptor complexes medium subunit family- Family
PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chainDomain
PF00928Adaptor complexes medium subunit family (Adap_comp_sub)Adaptor complexes medium subunit family- Family
PF00025ADP-ribosylation factor family (Arf)ADP-ribosylation factor familyPfam combines a number of different Prosite families together Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
AP-1 complex subunit sigma-3
AP-1 complex subunit mu-1
AP-1 complex subunit gamma-1
AP-1 complex subunit beta-1
HLA class I histocompatibility antigen, A alpha chain
Protein Nef
ADP ribosylation factor 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR016635Adaptor protein complex, sigma subunitFamily
IPR011012Longin-like domain superfamilyHomologous Superfamily
IPR044733AP-1 complex subunit sigmaFamily
IPR000804Clathrin adaptor complex, small chainConserved Site
IPR022775AP complex, mu/sigma subunitDomain
IPR050431Adaptor complexes medium subunitFamily
IPR011012Longin-like domain superfamilyHomologous Superfamily
IPR022775AP complex, mu/sigma subunitDomain
IPR036168AP-2 complex subunit mu, C-terminal superfamilyHomologous Superfamily
IPR028565Mu homology domainDomain
IPR018240Clathrin adaptor, mu subunit, conserved siteConserved Site
IPR001392Clathrin adaptor, mu subunitFamily
IPR016024Armadillo-type foldHomologous Superfamily
IPR017107Adaptor protein complex AP-1, gamma subunitFamily
IPR011989Armadillo-like helicalHomologous Superfamily
IPR008153Gamma-adaptin ear (GAE) domainDomain
IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalDomain
IPR013041Clathrin adaptor, appendage, Ig-like subdomain superfamilyHomologous Superfamily
IPR050840Adaptor Complexes Large SubunitFamily
IPR008152Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomainDomain
IPR016024Armadillo-type foldHomologous Superfamily
IPR013037Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomainHomologous Superfamily
IPR000225ArmadilloRepeat
IPR026739AP complex subunit betaFamily
IPR011989Armadillo-like helicalHomologous Superfamily
IPR012295TBP domain superfamilyHomologous Superfamily
IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalDomain
IPR015151Beta-adaptin appendage, C-terminal subdomainDomain
IPR013041Clathrin adaptor, appendage, Ig-like subdomain superfamilyHomologous Superfamily
IPR008152Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomainDomain
IPR009028Coatomer/calthrin adaptor appendage, C-terminal subdomainHomologous Superfamily
IPR016342AP-1/2/4 complex subunit betaFamily
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR010579MHC class I, alpha chain, C-terminalDomain
IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
IPR001039MHC class I alpha chain, alpha1 alpha2 domainsDomain
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR007110Immunoglobulin-like domainDomain
IPR050208Antigen-presenting and immune regulatory MHC class I-relatedFamily
IPR003597Immunoglobulin C1-setDomain
IPR011161MHC class I-like antigen recognition-likeDomain
IPR037055MHC class I-like antigen recognition-like superfamilyHomologous Superfamily
IPR001558HIV negative factor NefFamily
IPR027481HIV-1 Nef protein, core domain superfamilyHomologous Superfamily
IPR027480HIV-1 Nef protein, anchor domain superfamilyHomologous Superfamily
IPR045872ADP-ribosylation factor 1-5Family
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR005225Small GTP-binding domainDomain
IPR024156Small GTPase superfamily, ARF typeFamily
IPR006689Small GTPase superfamily, ARF/SAR typeFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ96PC3
PharosQ10567
PharosP04439
PharosP84077