8CSP
Human mitochondrial small subunit assembly intermediate (State A)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth 0] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8091481 | 3000334 | SCOP2B (2022-06-29) |
P [auth J] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8095431 | 3000135 | SCOP2B (2022-06-29) |
X [auth R] | SCOP2B Superfamily | Mitochondrial 28S ribosomal protein S22-like | 8051932 | 3002074 | SCOP2B (2022-06-29) |
EA [auth Y] | SCOP2B Superfamily | Mitochondrial 28S ribosomal protein S31-like | 8090914 | 3002471 | SCOP2B (2022-06-29) |
I [auth B] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063850 | 3001397 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth 1] | PF10213 | e8csp11 | A: a+b two layers | X: dsRBD-like | H: Peptidyl-tRNA hydrolase domain-like (From Topology) | T: Peptidyl-tRNA hydrolase domain-like | F: PF10213 | ECOD (1.6) |
R [auth L] | PF00312 | e8cspL1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF00312 | ECOD (1.6) |
T [auth N] | PF00366 | e8cspN1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00366 | ECOD (1.6) |
A [auth 0] | PF16053 | e8csp01 | A: beta barrels | X: SH3 | H: Mitoribosomal protein mS34 (From Topology) | T: Mitoribosomal protein mS34 | F: PF16053 | ECOD (1.6) |
J [auth C] | PF14955 | e8cspC1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF14955 | ECOD (1.6) |
K [auth D] | PF03719 | e8cspD1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF03719 | ECOD (1.6) |
K [auth D] | PF00333 | e8cspD2 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: PF00333 | ECOD (1.6) |
L [auth E] | PF01250 | e8cspE1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: PF01250 | ECOD (1.6) |
M [auth F] | PF00177 | e8cspF1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: PF00177 | ECOD (1.6) |
N [auth G] | PF00380 | e8cspG1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
O [auth H] | PF00338 | e8cspH1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
P [auth J] | PF00164 | e8cspJ1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00164 | ECOD (1.6) |
S [auth M] | PF00886 | e8cspM1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: PF00886 | ECOD (1.6) |
U [auth O] | PF01084 | e8cspO1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF01084 | ECOD (1.6) |
V [auth P] | PF01084 | e8cspP1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF01084 | ECOD (1.6) |
X [auth R] | PF10245 | e8cspR1 | A: a+b complex topology | X: Mitoribosomal protein mS22 (From Topology) | H: Mitoribosomal protein mS22 (From Topology) | T: Mitoribosomal protein mS22 | F: PF10245 | ECOD (1.6) |
Y [auth S] | PF10484 | e8cspS1 | A: alpha arrays | X: RuvA-C | H: Mitoribosomal protein mS23 (From Topology) | T: Mitoribosomal protein mS23 | F: PF10484 | ECOD (1.6) |
Z [auth T] | PF05047 | e8cspT1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: PF05047 | ECOD (1.6) |
AA [auth U] | PF14943 | e8cspU1 | A: extended segments | X: Mitoribosomal protein mS26 (From Topology) | H: Mitoribosomal protein mS26 (From Topology) | T: Mitoribosomal protein mS26 | F: PF14943 | ECOD (1.6) |
BA [auth V] | PF10037 | e8cspV1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF10037 | ECOD (1.6) |
CA [auth W] | PF10246 | e8cspW1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF10246 | ECOD (1.6) |
DA [auth X] | PF10236 | e8cspX2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF10236 | ECOD (1.6) |
DA [auth X] | PF10236 | e8cspX1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF10236 | ECOD (1.6) |
FA [auth Z] | PF08293 | e8cspZ1 | A: extended segments | X: Mitoribosomal protein mS33 (From Topology) | H: Mitoribosomal protein mS33 (From Topology) | T: Mitoribosomal protein mS33 | F: PF08293 | ECOD (1.6) |
GA [auth a] | F_UNCLASSIFIED | e8cspa1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: F_UNCLASSIFIED | ECOD (1.6) |
GA [auth a] | PF01926 | e8cspa2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF01926 | ECOD (1.6) |
D [auth 5] | F_UNCLASSIFIED | e8csp51 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth 5] | PF00398 | e8csp52 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF00398 | ECOD (1.6) |
F [auth 8] | F_UNCLASSIFIED | e8csp82 | A: a+b two layers | X: Alpha-beta plaits | H: Probable ACP-binding domain of malonyl-CoA ACP transacylase (From Topology) | T: Probable ACP-binding domain of malonyl-CoA ACP transacylase | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth 8] | PF00698 | e8csp81 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: FabD/lysophospholipase-like | F: PF00698 | ECOD (1.6) |
I [auth B] | PF00318 | e8cspB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: PF00318 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth 1] | PF10213 | Mitochondrial ribosomal subunit protein (MRP-S28) | Mitochondrial ribosomal subunit protein | - | Family |
C [auth 4] | PF13041 | PPR repeat family (PPR_2) | PPR repeat family | - | Repeat |
R [auth L] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | - | Domain |
T [auth N] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | - | Domain |
A [auth 0] | PF16053 | Mitochondrial 28S ribosomal protein S34 (MRP-S34) | Mitochondrial 28S ribosomal protein S34 | - | Family |
K [auth D] | PF21251 | 40S ribosomal protein rpS2 (S5p), N-terminal (S5p_N) | 40S ribosomal protein rpS2 (S5p), N-terminal | This entry represents an extension found at the N-terminal of mammalian 28S ribosomal protein S5 [1,2]. This lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the mRNA channel entrance [2]. | Domain |
K [auth D] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | - | Domain |
K [auth D] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | - | Domain |
L [auth E] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | - | Domain |
M [auth F] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
N [auth G] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
O [auth H] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
P [auth J] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | - | Family |
S [auth M] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
U [auth O] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
V [auth P] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
X [auth R] | PF10245 | Mitochondrial 28S ribosomal protein S22 (MRP-S22) | Mitochondrial 28S ribosomal protein S22 | - | Family |
Y [auth S] | PF10484 | Mitochondrial ribosomal protein S23 (MRP-S23) | Mitochondrial ribosomal protein S23 | - | Family |
Z [auth T] | PF05047 | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8) | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain | The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ... | Domain |
AA [auth U] | PF14943 | Mitochondrial ribosome subunit S26 (MRP-S26) | Mitochondrial ribosome subunit S26 | - | Family |
BA [auth V] | PF10037 | Mitochondrial 28S ribosomal protein S27 (MRP-S27) | Mitochondrial 28S ribosomal protein S27 | - | Repeat |
CA [auth W] | PF10246 | Mitochondrial ribosomal protein MRP-S35 (MRP-S35) | Mitochondrial ribosomal protein MRP-S35 | - | Family |
DA [auth X] | PF10236 | Mitochondrial ribosomal death-associated protein 3 (DAP3) | Mitochondrial ribosomal death-associated protein 3 | - | Family |
EA [auth Y] | PF15433 | Mitochondrial 28S ribosomal protein S31 (MRP-S31) | Mitochondrial 28S ribosomal protein S31 | - | Family |
FA [auth Z] | PF08293 | Mitochondrial ribosomal subunit S27 (MRP-S33) | Mitochondrial ribosomal subunit S27 | - | Family |
GA [auth a] | PF01926 | 50S ribosome-binding GTPase (MMR_HSR1) | 50S ribosome-binding GTPase | - | Family |
D [auth 5] | PF00398 | Ribosomal RNA adenine dimethylase (RrnaAD) | Ribosomal RNA adenine dimethylase | - | Domain |
E [auth 7] | PF09243 | Mitochondrial small ribosomal subunit Rsm22 (Rsm22) | Mitochondrial small ribosomal subunit Rsm22 | - | Family |
F [auth 8] | PF00698 | Acyl transferase domain (Acyl_transf_1) | Acyl transferase domain | - | Domain |
G [auth 9] | PF01926 | 50S ribosome-binding GTPase (MMR_HSR1) | 50S ribosome-binding GTPase | - | Family |
G [auth 9] | PF21516 | YqeH-like, C-terminal (YqeH-like_C) | YqeH-like, C-terminal | This entry is found at the C-terminal of Nitric oxide-associated protein 1 (NOA1) from animals and rice, BPG2 from Arabidopsis and YqeH from B. subtilis. YqeH is an orthologue of NOA1. This domain has a beta-sandwich structure with homology to the RN ... | Domain |
I [auth B] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |