Human mitochondrial small subunit assembly intermediate (State A)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A [auth 0] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8091481 | 3000334 | SCOP2B (2022-06-29) |
| I [auth B] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063850 | 3001397 | SCOP2B (2022-06-29) |
| P [auth J] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8095431 | 3000135 | SCOP2B (2022-06-29) |
| X [auth R] | SCOP2B Superfamily | Mitochondrial 28S ribosomal protein S22-like | 8051932 | 3002074 | SCOP2B (2022-06-29) |
| EA [auth Y] | SCOP2B Superfamily | Mitochondrial 28S ribosomal protein S31-like | 8090914 | 3002471 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth 0] | e8csp01 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| B [auth 1] | e8csp11 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| D [auth 5] | e8csp51 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| G [auth 9] | e8csp901 | A: Rossmann-like | X: Rossmann-related | H: FAD/NAD(P)-binding domain | T: Cas9_a | F: | ECOD (20:10:01) | |
| I [auth B] | e8cspB1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| J [auth C] | e8cspC1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| K [auth D] | e8cspD1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| M [auth F] | e8cspF1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| N [auth G] | e8cspG1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| O [auth H] | e8cspH1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| P [auth J] | e8cspJ1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| R [auth L] | e8cspL1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| S [auth M] | e8cspM1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| T [auth N] | e8cspN1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| U [auth O] | e8cspO1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| V [auth P] | e8cspP1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| X [auth R] | e8cspR1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| Y [auth S] | e8cspS1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| Z [auth T] | e8cspT1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| AA [auth U] | e8cspU1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| CA [auth W] | e8cspW1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| DA [auth X] | e8cspX1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| GA [auth a] | e8cspa1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| F [auth 8] | e8csp81 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| FA [auth Z] | e8cspZ1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| BA [auth V] | e8cspV1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) | |
| W [auth Q] | e8cspQ01 | A: Rossmann-like | X: Rossmann-related | H: FAD/NAD(P)-binding domain | T: Cas9_a | F: | ECOD (20:10:01) | |
| L [auth E] | e8cspE1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Methyltransf_4 | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| D [auth 5] | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (utative) |
| D [auth 5] | 1.10.8.100 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (utative) |
| L [auth E] | 3.30.70.60 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Ribosomal protein S6/Translation elongation factor EF1B | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A [auth 0] | PF16053 | Mitochondrial 28S ribosomal protein S34 (MRP-S34) | Mitochondrial 28S ribosomal protein S34 | - | Family |
| B [auth 1] | PF10213 | Mitochondrial ribosomal subunit protein (MRP-S28) | Mitochondrial ribosomal subunit protein | - | Family |
| D [auth 5] | PF00398 | Ribosomal RNA adenine dimethylase (RrnaAD) | Ribosomal RNA adenine dimethylase | Domain | |
| E [auth 7] | PF09243 | Mitochondrial small ribosomal subunit Rsm22 (Rsm22) | Mitochondrial small ribosomal subunit Rsm22 | - | Family |
| G [auth 9] | PF01926 | 50S ribosome-binding GTPase (MMR_HSR1) | 50S ribosome-binding GTPase | - | Family |
| G [auth 9] | PF21516 | YqeH-like, C-terminal (YqeH-like_C) | YqeH-like, C-terminal | This entry is found at the C-terminal of Nitric oxide-associated protein 1 (NOA1) from animals and rice, BPG2 from Arabidopsis and YqeH from B. subtilis. YqeH is an orthologue of NOA1. This domain has a beta-sandwich structure with homology to the RN ... | Domain |
| I [auth B] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| K [auth D] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| K [auth D] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| M [auth F] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| N [auth G] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| O [auth H] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| P [auth J] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| R [auth L] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| S [auth M] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
| T [auth N] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| U [auth O] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
| V [auth P] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
| X [auth R] | PF10245 | Mitochondrial 28S ribosomal protein S22 (MRP-S22) | Mitochondrial 28S ribosomal protein S22 | - | Family |
| Y [auth S] | PF10484 | Mitochondrial ribosomal protein S23 (MRP-S23) | Mitochondrial ribosomal protein S23 | - | Family |
| Z [auth T] | PF05047 | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8) | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain | The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ... | Domain |
| AA [auth U] | PF14943 | Mitochondrial ribosome subunit S26 (MRP-S26) | Mitochondrial ribosome subunit S26 | - | Family |
| DA [auth X] | PF10236 | Mitochondrial ribosomal death-associated protein 3 (DAP3) | Mitochondrial ribosomal death-associated protein 3 | - | Family |
| F [auth 8] | PF00698 | Acyl transferase domain (Acyl_transf_1) | Acyl transferase domain | Domain | |
| FA [auth Z] | PF08293 | Mitochondrial ribosomal subunit S27 (MRP-S33) | Mitochondrial ribosomal subunit S27 | - | Family |
| C [auth 4] | PF13812 | Pentatricopeptide repeat domain (PPR_3) | Pentatricopeptide repeat domain | - | Repeat |
| C [auth 4] | PF22330 | Small ribosomal subunit protein mS39, PPR (Rib_mS39_PPR) | Small ribosomal subunit protein mS39, PPR | - | Repeat |
| L [auth E] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | Domain |














