8CMU | pdb_00008cmu

High resolution structure of the coagulation Factor XIII A2B2 heterotetramer complex.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	CsgC/transglutaminase domain-like	8055219	3002048	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cysteine proteinases	8055403	3001808	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	CsgC/transglutaminase domain-like	8055474	3002048	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	E set domains	8055027	3000070	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CsgC/transglutaminase domain-like	8055219	3002048	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CsgC/transglutaminase domain-like	8055474	3002048	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	E set domains	8055027	3000070	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cysteine proteinases	8055403	3001808	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00868	Transglutaminase family (Transglut_N)	Transglutaminase family		Domain
A, B	PF00927	Transglutaminase family, C-terminal ig like domain (Transglut_C)	Transglutaminase family, C-terminal ig like domain		Domain
A, B	PF01841	Transglutaminase-like superfamily (Transglut_core)	Transglutaminase-like superfamily	This domain is found in animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that ...	This domain is found in animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' [1]. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase [2], it is proposed that many, if not all, microbial homologues of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease. [3]	Domain
C, D	PF00084	Sushi repeat (SCR repeat) (Sushi)	Sushi repeat (SCR repeat)		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Coagulation factor XIII A chain	aminoacyltransferase activity protein-glutamine gamma-glutamyltransferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	multicellular organismal process regulation of body fluid levels wound healing response to stimulus hemostasis biological regulation blood coagulation response to stress coagulation regulation of biological quality response to wounding protein activation cascade primary metabolic process gene expression multicellular organismal process regulation of body fluid levels wound healing response to stimulus hemostasis biological regulation blood coagulation response to stress coagulation regulation of biological quality response to wounding protein activation cascade primary metabolic process gene expression macromolecule biosynthetic process protein maturation biosynthetic process blood coagulation, fibrin clot formation metabolic process cellular process protein metabolic process macromolecule metabolic process peptide cross-linking macromolecule modification protein modification process	cellular anatomical structure extracellular region extracellular space blood microparticle protein-containing complex catalytic complex transferase complex membrane-bounded organelle vesicle lumen intracellular anatomical structure intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen intracellular membrane-bounded organelle cellular anatomical structure extracellular region extracellular space blood microparticle protein-containing complex catalytic complex transferase complex membrane-bounded organelle vesicle lumen intracellular anatomical structure intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen intracellular membrane-bounded organelle secretory granule lumen endomembrane system intracellular organelle lumen intracellular organelle cytoplasmic vesicle organelle lumen organelle secretory granule secretory vesicle cytoplasm platelet alpha granule vesicle platelet alpha granule lumen
C, D	Coagulation factor XIII B chain	-	multicellular organismal process regulation of body fluid levels wound healing response to stimulus hemostasis biological regulation blood coagulation response to stress coagulation regulation of biological quality response to wounding protein activation cascade primary metabolic process gene expression multicellular organismal process regulation of body fluid levels wound healing response to stimulus hemostasis biological regulation blood coagulation response to stress coagulation regulation of biological quality response to wounding protein activation cascade primary metabolic process gene expression macromolecule biosynthetic process protein maturation biosynthetic process blood coagulation, fibrin clot formation metabolic process cellular process protein metabolic process macromolecule metabolic process	cellular anatomical structure extracellular region extracellular space protein-containing complex catalytic complex transferase complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036985	Transglutaminase-like superfamily	Homologous Superfamily
A, B	IPR036238	Transglutaminase, C-terminal domain superfamily	Homologous Superfamily
A, B	IPR013808	Transglutaminase, active site	Active Site
A, B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B	IPR002931	Transglutaminase-like	Domain
A, B	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, B	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A, B	IPR001102	Transglutaminase, N-terminal	Domain
A, B	IPR008958	Transglutaminase, C-terminal	Domain
A, B	IPR050779	Protein-glutamine gamma-glutamyltransferases	Family
A, B	IPR023608	Protein-glutamine gamma-glutamyltransferase, animal	Family
C, D	IPR051503	Complement System Regulators and Virion Entry Mediators	Family
C, D	IPR000436	Sushi/SCR/CCP domain	Domain
C, D	IPR035976	Sushi/SCR/CCP superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P00488	congenital factor XIII deficiency factor XIII, A subunit, deficiency of Venous Thrombosis allergic contact dermatitis myocardial infarction thrombophilia malignant ependymoma myopathy pancreatic intraductal papillary-mucinous neoplasm pituitary cancer adrenal cortex carcinoma thrombophilia due to thrombin defect Becker muscular dystrophy diabetes mellitus exocrine pancreatic carcinoma congenital factor XIII deficiency factor XIII, A subunit, deficiency of Venous Thrombosis allergic contact dermatitis myocardial infarction thrombophilia malignant ependymoma myopathy pancreatic intraductal papillary-mucinous neoplasm pituitary cancer adrenal cortex carcinoma thrombophilia due to thrombin defect Becker muscular dystrophy diabetes mellitus exocrine pancreatic carcinoma invasive ductal breast carcinoma lung carcinoma malignant pancreatic neoplasm ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Sjogren syndrome tuberculosis Duchenne muscular dystrophy limb-girdle muscular dystrophy malignant colon neoplasm pancreatic intraductal papillary-mucinous carcinoma Pick disease Alzheimer disease ductal breast carcinoma in situ glioblastoma interstitial cystitis lung cancer
C, D	Pharos: P05160	congenital factor XIII deficiency factor XIII, b subunit, deficiency of age-related macular degeneration Venous Thrombosis pancreatic ductal adenocarcinoma retinal degeneration macular degeneration

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.