8C97 | pdb_00008c97

Cryo-EM captures early ribosome assembly in action


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth S]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
H [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
G [auth N]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
F [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
L [auth Y]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
K [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
J [auth T]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth S]F_UNCLASSIFIEDe8c97S1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: F_UNCLASSIFIEDECOD (1.6)
H [auth P]F_UNCLASSIFIEDe8c97P1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
G [auth N]F_UNCLASSIFIEDe8c97N1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: F_UNCLASSIFIEDECOD (1.6)
F [auth K]F_UNCLASSIFIEDe8c97K1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: F_UNCLASSIFIEDECOD (1.6)
EF_UNCLASSIFIEDe8c97E1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe8c97D1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
B [auth 2]F_UNCLASSIFIEDe8c9721 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: F_UNCLASSIFIEDECOD (1.6)
L [auth Y]F_UNCLASSIFIEDe8c97Y1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: F_UNCLASSIFIEDECOD (1.6)
K [auth U]F_UNCLASSIFIEDe8c97U1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
J [auth T]F_UNCLASSIFIEDe8c97T1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: F_UNCLASSIFIEDECOD (1.6)
A [auth 0]F_UNCLASSIFIEDe8c9701 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth S]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
H [auth P]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
G [auth N]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
F [auth K]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
L [auth Y]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
K [auth U]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
K [auth U]PF00467KOW motif (KOW)KOW motif- Family
J [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth S]50S ribosomal protein L22
H [auth P]50S ribosomal protein L19
G [auth N]50S ribosomal protein L17
F [auth K]50S ribosomal protein L14
50S ribosomal protein L4
50S ribosomal protein L3
C [auth A]23S rRNA---
B [auth 2]50S ribosomal protein L34
L [auth Y]50S ribosomal protein L29
K [auth U]50S ribosomal protein L24
J [auth T]50S ribosomal protein L23
A [auth 0]50S ribosomal protein L32

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
I [auth S]IPR001063Large ribosomal subunit protein uL22Family
I [auth S]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
I [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
I [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
H [auth P]IPR001857Large ribosomal subunit protein bL19Family
H [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
H [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
H [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
G [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
G [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
G [auth N]IPR000456Large ribosomal subunit protein bL17Family
F [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
F [auth K]IPR000218Large ribosomal subunit protein uL14Family
F [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
F [auth K]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
IPR013005Large ribosomal subunit protein uL4-likeFamily
IPR002136Large ribosomal subunit protein uL4Family
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
B [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
B [auth 2]IPR000271Large ribosomal subunit protein bL34Family
L [auth Y]IPR050063Universal ribosomal protein uL29Family
L [auth Y]IPR001854Large ribosomal subunit protein uL29Family
L [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
L [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
K [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
K [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
K [auth U]IPR003256Large ribosomal subunit protein uL24Family
K [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
K [auth U]IPR005824KOWDomain
K [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
J [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
J [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
J [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
J [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
A [auth 0]IPR002677Large ribosomal subunit protein bL32Family
A [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
A [auth 0]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily