8BVJ
Hfq-Crc-estA translation repression complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth R] | PF17209 | e8bvjR1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
B [auth T] | PF17209 | e8bvjT1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
C [auth J] | PF17209 | e8bvjJ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
D [auth L] | PF17209 | e8bvjL1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
E [auth N] | PF17209 | e8bvjN1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
F [auth P] | PF17209 | e8bvjP1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
G [auth X] | PF17209 | e8bvjX1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
H [auth Y] | PF17209 | e8bvjY1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
I [auth S] | PF17209 | e8bvjS1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
J [auth U] | PF17209 | e8bvjU1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
K [auth V] | PF17209 | e8bvjV1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
L [auth W] | PF17209 | e8bvjW1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
M [auth K] | PF17209 | e8bvjK1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
N [auth M] | PF17209 | e8bvjM1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
O [auth D] | PF17209 | e8bvjD1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
P [auth E] | PF17209 | e8bvjE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
Q [auth F] | PF17209 | e8bvjF1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
R [auth I] | PF17209 | e8bvjI1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF17209 | ECOD (1.6) |
S [auth Q] | PF03372 | e8bvjQ1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF03372 | ECOD (1.6) |
U [auth G] | PF03372 | e8bvjG1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF03372 | ECOD (1.6) |
V [auth C] | PF03372 | e8bvjC1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF03372 | ECOD (1.6) |
W [auth A] | PF03372 | e8bvjA1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF03372 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17209 | Hfq protein (Hfq) | Hfq protein | - | Domain | |
S [auth Q], U [auth G], V [auth C], W [auth A] | PF03372 | Endonuclease/Exonuclease/phosphatase family (Exo_endo_phos) | Endonuclease/Exonuclease/phosphatase family | This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling [1]. This family includes: AP endonuclease proteins EC:4.2.99.18 e.g Swiss:P27695, DNase I proteins EC:3. ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR010920 | LSM domain superfamily | Homologous Superfamily | |
IPR005001 | RNA-binding protein Hfq | Family | |
IPR047575 | Sm domain | Domain | |
S [auth Q], U [auth G], V [auth C], W [auth A] | IPR005135 | Endonuclease/exonuclease/phosphatase | Domain |
S [auth Q], U [auth G], V [auth C], W [auth A] | IPR037493 | Exodeoxyribonuclease III-like | Family |
S [auth Q], U [auth G], V [auth C], W [auth A] | IPR004808 | AP endonuclease 1 | Family |
S [auth Q], U [auth G], V [auth C], W [auth A] | IPR036691 | Endonuclease/exonuclease/phosphatase superfamily | Homologous Superfamily |