8BMX
Bacteroides thetaiotaomicron B12 TonB dependent transporter in complex with a surface lipoprotein
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | PF00593 | e8bmxC1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Ligand-gated protein channel | F: PF00593 | ECOD (1.6) |
A [auth C] | PF07715 | e8bmxC2 | A: a+b complex topology | X: N0 domain in phage tail proteins and secretins-like | H: TonB-dependent receptor plug domain (From Topology) | T: TonB-dependent receptor plug domain | F: PF07715 | ECOD (1.6) |
B [auth A] | PF00593 | e8bmxA1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Ligand-gated protein channel | F: PF00593 | ECOD (1.6) |
B [auth A] | PF07715 | e8bmxA2 | A: a+b complex topology | X: N0 domain in phage tail proteins and secretins-like | H: TonB-dependent receptor plug domain (From Topology) | T: TonB-dependent receptor plug domain | F: PF07715 | ECOD (1.6) |
C [auth B] | PF00593 | e8bmxB1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Ligand-gated protein channel | F: PF00593 | ECOD (1.6) |
C [auth B] | PF07715 | e8bmxB2 | A: a+b complex topology | X: N0 domain in phage tail proteins and secretins-like | H: TonB-dependent receptor plug domain (From Topology) | T: TonB-dependent receptor plug domain | F: PF07715 | ECOD (1.6) |
D | PF16819 | e8bmxD1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF16819 | ECOD (1.6) |
E | PF16819 | e8bmxE1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF16819 | ECOD (1.6) |
F | PF16819 | e8bmxF1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF16819 | ECOD (1.6) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C], B [auth A], C [auth B] | IPR039426 | TonB-dependent receptor-like | Family |
A [auth C], B [auth A], C [auth B] | IPR037066 | TonB-dependent receptor, plug domain superfamily | Homologous Superfamily |
A [auth C], B [auth A], C [auth B] | IPR036942 | TonB-dependent receptor-like, beta-barrel domain superfamily | Homologous Superfamily |
A [auth C], B [auth A], C [auth B] | IPR000531 | TonB-dependent receptor-like, beta-barrel | Domain |
A [auth C], B [auth A], C [auth B] | IPR012910 | TonB-dependent receptor, plug domain | Domain |
IPR011048 | Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily | Homologous Superfamily | |
IPR031815 | Protein of unknown function DUF5074 | Family | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |