8B5L | pdb_00008b5l

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ISCOP2B SuperfamilyRibosomal protein L16p/L10e 8097320 3000884 SCOP2B (2022-06-29)
F [auth e]SCOP2B SuperfamilyRibosomal protein L32e 8102088 3000982 SCOP2B (2022-06-29)
YA [auth U]SCOP2B Superfamily60S Ribosomal protein L22e 8061156 3002158 SCOP2B (2022-06-29)
XA [auth l]SCOP2B SuperfamilyRibosomal protein L39e 8095595 3001756 SCOP2B (2022-06-29)
VA [auth c]SCOP2B SuperfamilyL30e-like 8094953 3001739 SCOP2B (2022-06-29)
SA [auth N]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8082477 3000210 SCOP2B (2022-06-29)
NA [auth g]SCOP2B SuperfamilyRibosomal protein L34e-like 8103328 3002203 SCOP2B (2022-06-29)
LA [auth a]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8097818 3001045 SCOP2B (2022-06-29)
KA [auth f]SCOP2B SuperfamilyTranslational proteins 8093714 3000811 SCOP2B (2022-06-29)
EA [auth p]SCOP2B SuperfamilyZn-binding ribosomal proteins 8101435 3001320 SCOP2B (2022-06-29)
DA [auth X]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8095966 3000210 SCOP2B (2022-06-29)
CA [auth R]SCOP2B SuperfamilyRibosomal protein L19 (L19e) 8107568 3000890 SCOP2B (2022-06-29)
BA [auth B]SCOP2B SuperfamilyTranslational proteins 8078357 3000811 SCOP2B (2022-06-29)
AA [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076754 3000334 SCOP2B (2022-06-29)
Z [auth C]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052828 3002143 SCOP2B (2022-06-29)
Z [auth C]SCOP2B SuperfamilyRibosomal protein L4 8052829 3001146 SCOP2B (2022-06-29)
T [auth i]SCOP2B SuperfamilyRibosomal protein L36e 8053119 3002161 SCOP2B (2022-06-29)
R [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053047 3000334 SCOP2B (2022-06-29)
O [auth k]SCOP2B SuperfamilyRibosomal L38e protein-like 8093716 3002206 SCOP2B (2022-06-29)
M [auth J]SCOP2B SuperfamilyRL5-like 8073894 3001709 SCOP2B (2022-06-29)
K [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like 8072048 3000433 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ISecEe8b5lI1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
H [auth S]SecEe8b5lS1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
F [auth e]SecEe8b5le1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
YA [auth U]SecEe8b5lU1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
XA [auth l]SecEe8b5ll1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
E [auth G]SecEe8b5lG1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
WA [auth W]SecEe8b5lW1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
VA [auth c]SecEe8b5lc1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
UA [auth s]SecEe8b5ls1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
TA [auth o]SecEe8b5lo1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
SA [auth N]SecEe8b5lN1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
RA [auth j]SecEe8b5lj1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
QA [auth v]SLBBe8b5lv1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: SLBBECOD (v294.1)
PA [auth u]SecEe8b5lu1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
NA [auth g]SecEe8b5lg1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
MA [auth A]SecEe8b5lA1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
LA [auth a]SecEe8b5la1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
KA [auth f]SecEe8b5lf1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
JA [auth Q]SecEe8b5lQ1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
IA [auth r]SecEe8b5lr1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
GA [auth H]SecEe8b5lH1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
FA [auth M]SecEe8b5lM1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
EA [auth p]SecEe8b5lp1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
DA [auth X]SecEe8b5lX1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
C [auth d]SecEe8b5ld1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
CA [auth R]SecEe8b5lR1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
BA [auth B]SecEe8b5lB1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
AA [auth Y]SecEe8b5lY1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
Z [auth C]SecEe8b5lC1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
X [auth O]SecEe8b5lO1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
W [auth L]SecEe8b5lL1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
V [auth n]SecEe8b5ln1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
U [auth F]SecEe8b5lF1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
T [auth i]SecEe8b5li1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
B [auth P]SecEe8b5lP1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
S [auth T]SecEe8b5lT1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
R [auth Z]SecEe8b5lZ1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
Q [auth m]SecEe8b5lm1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
P [auth b]SecEe8b5lb1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
O [auth k]SecEe8b5lk1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
N [auth q]SLBBe8b5lq1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: SLBBECOD (v294.1)
M [auth J]SecEe8b5lJ1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
L [auth E]SecEe8b5lE1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
K [auth V]SecEe8b5lV1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
J [auth D]SecEe8b5lD1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)
A [auth h]SecEe8b5lh1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: SecEECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
H [auth S]PF10559Plug domain of Sec61p (Plug_translocon)Plug domain of Sec61pThe Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side.The plug is unl ...The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side.The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 [1].
Domain
H [auth S]PF00344SecY (SecY)SecY- Family
H [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
YA [auth U]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
E [auth G]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
E [auth G]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
WA [auth W]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24eDomain
SA [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
OA [auth K]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
MA [auth A]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
MA [auth A]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
JA [auth Q]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
GA [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
GA [auth H]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
FA [auth M]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e familyBovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. Domain
FA [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
DA [auth X]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
DA [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
CA [auth R]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
CA [auth R]PF01280Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e)Ribosomal protein L19e, N-terminal domainThis domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain
CA [auth R]PF25476Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C)Ribosomal protein L19e, C-terminal domainThis domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain
BA [auth B]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
BA [auth B]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
AA [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
AA [auth Y]PF00467KOW motif (KOW)KOW motif- Family
Z [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
Z [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
Z [auth C]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
X [auth O]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
W [auth L]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
W [auth L]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
U [auth F]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. Domain
U [auth F]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
B [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
B [auth P]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
S [auth T]PF07074Translocon-associated protein, gamma subunit (TRAP-gamma) (TRAP-gamma)Translocon-associated protein, gamma subunit (TRAP-gamma)- Family
S [auth T]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
R [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
R [auth Z]PF00467KOW motif (KOW)KOW motif- Family
M [auth J]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
M [auth J]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
L [auth E]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
L [auth E]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
K [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
K [auth V]PF05753Translocon-associated protein beta (TRAPB) (TRAP_beta)Translocon-associated protein beta (TRAPB)- Family
J [auth D]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
J [auth D]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
J [auth D]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth 5]28S rRNA---
Ribosomal protein L10
H [auth S]60S ribosomal protein L18a
G [auth t]Signal sequence receptor subunit 3-
F [auth e]Ribosomal protein L32
YA [auth U]60S ribosomal protein L22
XA [auth l]60S ribosomal protein L39-like
E [auth G]60S ribosomal protein L7a -
WA [auth W]Ribosomal protein L24
VA [auth c]60S ribosomal protein L30
UA [auth s]Protein transport protein Sec61 subunit alpha isoform 1
TA [auth o]60S ribosomal protein L36a-like
SA [auth N]Ribosomal protein L15
RA [auth j]Ribosomal protein L37
QA [auth v]Translocon-associated protein subunit beta-
PA [auth u]Protein transport protein Sec61 subunit gamma
OA [auth K]Translocon-associated protein subunit delta- -
NA [auth g]60S ribosomal protein L34
MA [auth A]Ribosomal protein L8
LA [auth a]60S ribosomal protein L27a
KA [auth f]60S ribosomal protein L35a
JA [auth Q]Ribosomal protein L18
IA [auth r]60S ribosomal protein L28
HA [auth 7]5S rRNA---
GA [auth H]60S ribosomal protein L9
FA [auth M]60S ribosomal protein L14
EA [auth p]60S ribosomal protein L37a
DA [auth X]Ribosomal_L23eN domain-containing protein
C [auth d]60S ribosomal protein L31
CA [auth R]Ribosomal protein L19
BA [auth B]Ribosomal protein L3
AA [auth Y]Ribosomal protein L26
Z [auth C]60S ribosomal protein L4
Y [auth 8]5.8S rRNA---
X [auth O]60S ribosomal protein L13a
W [auth L]60S ribosomal protein L13
V [auth n]60S ribosomal protein L41
U [auth F]60S ribosomal protein L7
T [auth i]60S ribosomal protein L36
B [auth P]60S ribosomal protein L17
S [auth T]60S ribosomal protein L21
R [auth Z]60S ribosomal protein L27
Q [auth m]Ubiquitin-60S ribosomal protein L40
P [auth b]60S ribosomal protein L29
O [auth k]60S ribosomal protein L38
N [auth q]Translocon-associated protein subunit alpha- -
M [auth J]60S ribosomal protein L11
L [auth E]60S ribosomal protein L6
K [auth V]60S ribosomal protein L23
J [auth D]Ribosomal_L18_c domain-containing protein
A [auth h]60S ribosomal protein L35

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001197Large ribosomal subunit protein uL16, eukaryota/archaeaFamily
IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryota/archaeaConserved Site
IPR016180Large ribosomal subunit protein uL16 domainDomain
IPR047873Large ribosomal subunit protein uL16Family
H [auth S]IPR028877Large ribosomal subunit protein eL20Family
H [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
H [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
G [auth t]IPR009779Translocon-associated protein subunit gammaFamily
F [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
F [auth e]IPR001515Large ribosomal subunit protein eL32Family
F [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
YA [auth U]IPR002671Large ribosomal subunit protein eL22Family
YA [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
XA [auth l]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
XA [auth l]IPR000077Large ribosomal subunit protein eL39Family
XA [auth l]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
E [auth G]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
E [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
E [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
E [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
E [auth G]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
WA [auth W]IPR011017TRASH domainDomain
WA [auth W]IPR056366Large ribosomal subunit protein eL24Family
WA [auth W]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
WA [auth W]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
WA [auth W]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
VA [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
VA [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
VA [auth c]IPR000231Large ribosomal subunit protein eL30Family
VA [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
VA [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
UA [auth s]IPR002208SecY/SEC61-alpha familyFamily
UA [auth s]IPR030659SecY conserved siteConserved Site
UA [auth s]IPR019561Translocon Sec61/SecY, plug domainDomain
UA [auth s]IPR023201SecY domain superfamilyHomologous Superfamily
TA [auth o]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
TA [auth o]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
TA [auth o]IPR000552Large ribosomal subunit protein eL42Family
SA [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
SA [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
SA [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
SA [auth N]IPR000439Large ribosomal subunit protein eL15Family
RA [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
RA [auth j]IPR001569Large ribosomal subunit protein eL37Family
RA [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
RA [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
QA [auth v]IPR008856Translocon-associated protein subunit betaFamily
PA [auth u]IPR008158Protein translocase SEC61 complex, gamma subunitFamily
PA [auth u]IPR001901Protein translocase complex, SecE/Sec61-gamma subunitFamily
PA [auth u]IPR023391Protein translocase SecE domain superfamilyHomologous Superfamily
OA [auth K]IPR008855Translocon-associatedFamily
NA [auth g]IPR008195Large ribosomal subunit protein eL34Family
NA [auth g]IPR038562Large ribosomal subunit protein eL34, C-terminal domain superfamilyHomologous Superfamily
NA [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
MA [auth A]IPR023672Large ribosomal subunit protein uL2, archaea/eukaryotaFamily
MA [auth A]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
MA [auth A]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
MA [auth A]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
MA [auth A]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
MA [auth A]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
MA [auth A]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
MA [auth A]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
MA [auth A]IPR002171Large ribosomal subunit protein uL2Family
LA [auth a]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
LA [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
LA [auth a]IPR030878Large ribosomal subunit protein uL15Family
LA [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
LA [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
KA [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
KA [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
KA [auth f]IPR001780Large ribosomal subunit protein eL33Family
KA [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
JA [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
JA [auth Q]IPR000039Large ribosomal subunit protein eL18Family
JA [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
IA [auth r]IPR029004Ribosomal eL28/Mak16Domain
IA [auth r]IPR002672Large ribosomal subunit protein eL28Family
GA [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
GA [auth H]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
GA [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
GA [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
FA [auth M]IPR039660Large ribosomal subunit protein eL14Family
FA [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
FA [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
FA [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
EA [auth p]IPR002674Large ribosomal subunit protein eL43Family
EA [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EA [auth p]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
DA [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
DA [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
DA [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
DA [auth X]IPR019985Large ribosomal subunit protein uL23Family
DA [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
DA [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
C [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
C [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
C [auth d]IPR000054Large ribosomal subunit protein eL31Family
CA [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
CA [auth R]IPR057259Ribosomal protein L19e, N-terminal domainDomain
CA [auth R]IPR039547Large ribosomal subunit protein eL19Family
CA [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
CA [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
CA [auth R]IPR057260Ribosomal protein L19e, C-terminal domainDomain
CA [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
CA [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
BA [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
BA [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
BA [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
BA [auth B]IPR000597Large ribosomal subunit protein uL3Family
BA [auth B]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
AA [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
AA [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
AA [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AA [auth Y]IPR005824KOWDomain
AA [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
Z [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
Z [auth C]IPR002136Large ribosomal subunit protein uL4Family
Z [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
Z [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
Z [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
X [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
X [auth O]IPR005822Large ribosomal subunit protein uL13Family
X [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
X [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
W [auth L]IPR001380Large ribosomal subunit protein eL13Family
V [auth n]IPR007836Large ribosomal subunit protein eS32Family
U [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
U [auth F]IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
U [auth F]IPR039699Large ribosomal subunit protein uL30Family
U [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
U [auth F]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
U [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
U [auth F]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
T [auth i]IPR000509Large ribosomal subunit protein eL36Family
T [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
B [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
B [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
B [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
B [auth P]IPR001063Large ribosomal subunit protein uL22Family
B [auth P]IPR057265Large ribosomal subunit protein uL22, archaeaFamily
S [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
S [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
S [auth T]IPR001147Large ribosomal subunit protein eL21Family
S [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
R [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
R [auth Z]IPR005824KOWDomain
R [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth Z]IPR001141Large ribosomal subunit protein eL27Family
R [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
Q [auth m]IPR019956Ubiquitin domainDomain
Q [auth m]IPR019954Ubiquitin conserved siteConserved Site
Q [auth m]IPR050158Ubiquitin and ubiquitin-likeFamily
Q [auth m]IPR001975Large ribosomal subunit protein eL40 domainDomain
Q [auth m]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
Q [auth m]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
Q [auth m]IPR000626Ubiquitin-like domainDomain
P [auth b]IPR002673Large ribosomal subunit protein eL29Family
O [auth k]IPR002675Large ribosomal subunit protein eL38Family
O [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
N [auth q]IPR005595Translocon-associated protein (TRAP), alpha subunitFamily
M [auth J]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
M [auth J]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
M [auth J]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
M [auth J]IPR057266Large ribosomal subunit protein uL5, eukaryota/archaeaFamily
M [auth J]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
M [auth J]IPR002132Large ribosomal subunit protein uL5Family
L [auth E]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
L [auth E]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
L [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
L [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
L [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
L [auth E]IPR000915Large ribosomal subunit protein eL6Family
K [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
K [auth V]IPR000218Large ribosomal subunit protein uL14Family
K [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
J [auth D]IPR057268Large ribosomal subunit protein uL18Family
J [auth D]IPR005485Large ribosomal subunit protein uL18, eukaryota/archaeaFamily
J [auth D]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
A [auth h]IPR001854Large ribosomal subunit protein uL29Family
A [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
A [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
A [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotaFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
D [auth 5]1MA Parent Component: A

D [auth 5]5MC Parent Component: C

D [auth 5]7MG Parent Component: G

D [auth 5]A2M Parent Component: A

D [auth 5]B8H Parent Component: U

D [auth 5]B8K Parent Component: G

D [auth 5]BGH Parent Component: G

D [auth 5]E6G Parent Component: G

D [auth 5]E7G Parent Component: G

D [auth 5]I4U Parent Component: U

D [auth 5]OMC Parent Component: C

D [auth 5]OMG Parent Component: G

D [auth 5]OMU Parent Component: U

D [auth 5]P4U Parent Component: U

D [auth 5]P7G Parent Component: G

D [auth 5]PSU Parent Component: U

D [auth 5]UR3 Parent Component: U

Z [auth C]MLZ Parent Component: LYS

RESIDAA0076

PSI-MOD :  N6-methyl-L-lysine MOD:00085
Q [auth m]MLZ Parent Component: LYS

RESIDAA0076 , AA0076

PSI-MOD :  N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085