8AZW | pdb_00008azw

Cryo-EM structure of the plant 60S subunit


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth K]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
H [auth J]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
G [auth I]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
F [auth H]PF01280Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e)Ribosomal protein L19e, N-terminal domainThis domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain
F [auth H]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
E [auth G]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
E [auth G]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
TA [auth B]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
SA [auth A]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
D [auth F]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
D [auth F]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
C [auth E]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
C [auth E]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
Y [auth Z]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
V [auth X]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
U [auth W]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
T [auth V]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
B [auth D]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
B [auth D]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
S [auth U]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
S [auth U]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
R [auth T]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
R [auth T]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
Q [auth S]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
Q [auth S]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeThis entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. Domain
P [auth R]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
O [auth Q]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. Domain
O [auth Q]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
O [auth Q]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
N [auth P]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
M [auth O]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
M [auth O]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
L [auth N]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
L [auth N]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
K [auth M]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
K [auth M]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
K [auth M]PF00467KOW motif (KOW)KOW motif- Family
J [auth L]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24eDomain
A [auth C]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth K]eL22 (60S ribosomal protein L22)
H [auth J]eL21 (60S ribosomal protein L21)
G [auth I]eL20 (60S ribosomal protein L18a)
F [auth H]eL19 (60S ribosomal protein L19)
E [auth G]eL18 (60S ribosomal protein L18)
TA [auth B]5.8S rRNA---
SA [auth A]25S rRNA---
RA [auth l]nascent chain---
QA [auth u]uL6 (60S ribosomal protein L9)
PA [auth t]uL5 (60S ribosomal protein L11)
OA [auth s]uL4 (60S ribosomal protein L4)
NA [auth r]uL3 (60S ribosomal protein L3)
D [auth F]eL15 (60S ribosomal protein L15)
MA [auth q]uL30 (60S ribosomal protein L7)
LA [auth o]uL2 (60S ribosomal protein L8)
KA [auth n]uL29 (60S ribosomal protein L35)
JA [auth m]uL24 (60S ribosomal protein L26)
IA [auth k]uL23 (60S ribosomal protein L23a)
HA [auth j]uL22 (60S ribosomal protein L17)
GA [auth h]uL18 (60S ribosomal protein L5)
FA [auth g]uL16 (60S ribosomal protein L10)
EA [auth f]uL15 (60S ribosomal protein L27a)
DA [auth e]uL14 (60S ribosomal protein L23)
C [auth E]eL14 (60S ribosomal protein L14)
CA [auth d]uL13 (60S ribosomal protein L13a)
BA [auth c]eL8 (60S ribosomal protein L7a)
AA [auth b]eL6 (60S ribosomal protein L6)
Z [auth a]eL43 (60S ribosomal protein L37a)
Y [auth Z]eL42 (60S ribosomal protein L42)
X [auth p]eL41 (60S ribosomal protein L41)
W [auth Y]eL40 (60S ribosomal protein L40)---
V [auth X]eL39 (60S ribosomal protein L39)
U [auth W]eL38 (60S ribosomal protein L38)
T [auth V]eL37 (60S ribosomal protein L37)
B [auth D]eL13 (60S ribosomal protein L13)
S [auth U]eL36 (60S ribosomal protein L36)
R [auth T]eL34 (60S ribosomal protein L34)
Q [auth S]eL33 (60S ribosomal protein L35a)
P [auth R]eL32 (60S ribosomal protein L32)
O [auth Q]eL31 (60S ribosomal protein L31)
N [auth P]eL30 (60S ribosomal protein L30) -
M [auth O]eL29 (60S ribosomal protein L29)
L [auth N]eL28 (60S ribosomal protein L28)
K [auth M]eL27 (60S ribosomal protein L27)
J [auth L]eL24 (60S ribosomal protein L24)
A [auth C]5S rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth K]IPR002671Large ribosomal subunit protein eL22Family
I [auth K]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
H [auth J]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
H [auth J]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
H [auth J]IPR001147Large ribosomal subunit protein eL21Family
H [auth J]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
G [auth I]IPR028877Large ribosomal subunit protein eL20Family
G [auth I]IPR023573Large ribosomal subunit protein eL20 domainDomain
G [auth I]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
F [auth H]IPR039547Large ribosomal subunit protein eL19Family
F [auth H]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
F [auth H]IPR057260Ribosomal protein L19e, C-terminal domainDomain
F [auth H]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
F [auth H]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
F [auth H]IPR057259Ribosomal protein L19e, N-terminal domainDomain
F [auth H]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
F [auth H]IPR000196Large ribosomal subunit protein eL19 domainDomain
E [auth G]IPR021131Large ribosomal subunit protein uL15/eL18Domain
E [auth G]IPR000039Large ribosomal subunit protein eL18Family
E [auth G]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
QA [auth u]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
QA [auth u]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
QA [auth u]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
QA [auth u]IPR000702Large ribosomal subunit protein uL6-likeFamily
PA [auth t]IPR057266Large ribosomal subunit protein uL5, eukaryota/archaeaFamily
PA [auth t]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
PA [auth t]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
PA [auth t]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
PA [auth t]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
PA [auth t]IPR002132Large ribosomal subunit protein uL5Family
OA [auth s]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
OA [auth s]IPR002136Large ribosomal subunit protein uL4Family
OA [auth s]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
OA [auth s]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
OA [auth s]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
NA [auth r]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
NA [auth r]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
NA [auth r]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
NA [auth r]IPR000597Large ribosomal subunit protein uL3Family
NA [auth r]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
D [auth F]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
D [auth F]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
D [auth F]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
D [auth F]IPR000439Large ribosomal subunit protein eL15Family
MA [auth q]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
MA [auth q]IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
MA [auth q]IPR039699Large ribosomal subunit protein uL30Family
MA [auth q]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
MA [auth q]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
MA [auth q]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
MA [auth q]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
LA [auth o]IPR023672Large ribosomal subunit protein uL2, archaea/eukaryotaFamily
LA [auth o]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
LA [auth o]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
LA [auth o]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
LA [auth o]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
LA [auth o]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
LA [auth o]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
LA [auth o]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
LA [auth o]IPR002171Large ribosomal subunit protein uL2Family
KA [auth n]IPR001854Large ribosomal subunit protein uL29Family
KA [auth n]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
KA [auth n]IPR045059Large ribosomal subunit protein uL29, eukaryotaFamily
JA [auth m]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
JA [auth m]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
JA [auth m]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
JA [auth m]IPR005824KOWDomain
JA [auth m]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
JA [auth m]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
IA [auth k]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IA [auth k]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
IA [auth k]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
IA [auth k]IPR019985Large ribosomal subunit protein uL23Family
IA [auth k]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
IA [auth k]IPR013025Large ribosomal subunit protein uL23-likeFamily
HA [auth j]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
HA [auth j]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
HA [auth j]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
HA [auth j]IPR001063Large ribosomal subunit protein uL22Family
GA [auth h]IPR057268Large ribosomal subunit protein uL18Family
GA [auth h]IPR005485Large ribosomal subunit protein uL18, eukaryota/archaeaFamily
GA [auth h]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
FA [auth g]IPR001197Large ribosomal subunit protein uL16, eukaryota/archaeaFamily
FA [auth g]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
FA [auth g]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryota/archaeaConserved Site
FA [auth g]IPR016180Large ribosomal subunit protein uL16 domainDomain
FA [auth g]IPR047873Large ribosomal subunit protein uL16Family
EA [auth f]IPR021131Large ribosomal subunit protein uL15/eL18Domain
EA [auth f]IPR030878Large ribosomal subunit protein uL15Family
EA [auth f]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
EA [auth f]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
DA [auth e]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
DA [auth e]IPR000218Large ribosomal subunit protein uL14Family
DA [auth e]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
C [auth E]IPR039660Large ribosomal subunit protein eL14Family
C [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
C [auth E]IPR002784Large ribosomal subunit protein eL14 domainDomain
C [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth d]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
CA [auth d]IPR005822Large ribosomal subunit protein uL13Family
CA [auth d]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
CA [auth d]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
BA [auth c]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
BA [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
BA [auth c]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
BA [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
BA [auth c]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
BA [auth c]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
AA [auth b]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
AA [auth b]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AA [auth b]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
AA [auth b]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth b]IPR000915Large ribosomal subunit protein eL6Family
Z [auth a]IPR002674Large ribosomal subunit protein eL43Family
Z [auth a]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Z [auth a]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
Y [auth Z]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
Y [auth Z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Y [auth Z]IPR000552Large ribosomal subunit protein eL42Family
X [auth p]IPR007836Large ribosomal subunit protein eS32Family
V [auth X]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
V [auth X]IPR000077Large ribosomal subunit protein eL39Family
V [auth X]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
U [auth W]IPR002675Large ribosomal subunit protein eL38Family
U [auth W]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
T [auth V]IPR001569Large ribosomal subunit protein eL37Family
T [auth V]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
T [auth V]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
T [auth V]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
B [auth D]IPR001380Large ribosomal subunit protein eL13Family
B [auth D]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
S [auth U]IPR000509Large ribosomal subunit protein eL36Family
S [auth U]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
R [auth T]IPR008195Large ribosomal subunit protein eL34Family
R [auth T]IPR038562Large ribosomal subunit protein eL34, C-terminal domain superfamilyHomologous Superfamily
R [auth T]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
Q [auth S]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
Q [auth S]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
Q [auth S]IPR001780Large ribosomal subunit protein eL33Family
Q [auth S]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
P [auth R]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
P [auth R]IPR001515Large ribosomal subunit protein eL32Family
P [auth R]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
O [auth Q]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
O [auth Q]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
O [auth Q]IPR000054Large ribosomal subunit protein eL31Family
N [auth P]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
N [auth P]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
N [auth P]IPR039109Large ribosomal subunit protein eL30-likeFamily
N [auth P]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
M [auth O]IPR002673Large ribosomal subunit protein eL29Family
L [auth N]IPR029004Ribosomal eL28/Mak16Domain
L [auth N]IPR002672Large ribosomal subunit protein eL28Family
K [auth M]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
K [auth M]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
K [auth M]IPR005824KOWDomain
K [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
K [auth M]IPR001141Large ribosomal subunit protein eL27Family
K [auth M]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
J [auth L]IPR011017TRASH domainDomain
J [auth L]IPR056366Large ribosomal subunit protein eL24Family
J [auth L]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
J [auth L]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
J [auth L]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily