8APD | pdb_00008apd

rotational state 1d of the Trypanosoma brucei mitochondrial ATP synthase dimer


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Z [auth G1]F5_F8_type_Ce8apdG11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
AA [auth H1]F5_F8_type_Ce8apdH11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
HA [auth P1]F5_F8_type_Ce8apdP11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
IA [auth Q1]F5_F8_type_Ce8apdQ11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
KA [auth S1]F5_F8_type_Ce8apdS11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
LA [auth T1]F5_F8_type_Ce8apdT11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
MA [auth U1]F5_F8_type_Ce8apdU11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
NA [auth V1]F5_F8_type_Ce8apdV11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
OA [auth W1]F5_F8_type_Ce8apdW11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
PA [auth X1]F5_F8_type_Ce8apdX11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
JA [auth R1]F5_F8_type_Ce8apdR11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
GA [auth O1]F5_F8_type_Ce8apdO11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
CA [auth J1]F5_F8_type_Ce8apdJ11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
EA [auth L1]F5_F8_type_Ce8apdL11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
DA [auth K1]F5_F8_type_Ce8apdK11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
BA [auth I1]F5_F8_type_Ce8apdI11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
W [auth D1]F5_F8_type_Ce8apdD11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
X [auth E1]F5_F8_type_Ce8apdE11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
Y [auth F1]F5_F8_type_Ce8apdF11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
T [auth A1]F5_F8_type_Ce8apdA11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
V [auth C1]F5_F8_type_Ce8apdC11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)
U [auth B1]F5_F8_type_Ce8apdB11 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: F5_F8_type_CECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
AA [auth H1]PF02823ATP synthase, Delta/Epsilon chain, beta-sandwich domain (ATP-synt_DE_N)ATP synthase, Delta/Epsilon chain, beta-sandwich domainPart of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensit ...Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (Pfam:PF00213).
Domain
FA [auth M1]PF00213ATP synthase delta (OSCP) subunit (OSCP)ATP synthase delta (OSCP) subunit- Family
PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth M],
N [auth m]
subunit-g- - -
E [auth d]subunit-d- -
I [auth h]ATPTB4- -
Z [auth G1]ATP synthase gamma subunit -
AA [auth H1]ATP synthase, epsilon chain, putative
FA [auth M1]OSCP
ATPase subunit 9, putative
H [auth g]ATPTB3- - -
G [auth f]subunit-f- -
F [auth e]ATPTB1- -
D [auth c]subunit-8- -
C [auth a]ATP synthase subunit a-
CA [auth J1],
DA [auth K1],
EA [auth L1]
ATP synthase subunit p18, mitochondrial-
BA [auth I1]ATP synthase subunit epsilon, mitochondrial -
W [auth D1],
X [auth E1],
Y [auth F1]
ATP synthase subunit beta, mitochondrial
T [auth A1],
U [auth B1],
V [auth C1]
ATP synthase subunit alpha, mitochondrial -
S [auth r]ATPEG4---
R [auth q]ATPEG3- -
Q [auth p]subunit-b- - -
P [auth o]ATPTB12- -
O [auth n]ATPTB11- -
L [auth k]subunit-k- -
K [auth j]ATPTB6- - -
J [auth i]subunit-i/j- -
A [auth L],
M [auth l]
subunit-e- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
Z [auth G1]IPR000131ATP synthase, F1 complex, gamma subunitFamily
Z [auth G1]IPR035968ATP synthase, F1 complex, gamma subunit superfamilyHomologous Superfamily
AA [auth H1]IPR036771F0F1 ATP synthase delta/epsilon subunit, N-terminalHomologous Superfamily
AA [auth H1]IPR020546ATP synthase, F1 complex, delta/epsilon subunit, N-terminalDomain
AA [auth H1]IPR001469ATP synthase, F1 complex, delta/epsilon subunitFamily
FA [auth M1]IPR000711ATPase, OSCP/delta subunitFamily
FA [auth M1]IPR026015F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamilyHomologous Superfamily
IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
IPR038662F1F0 ATP synthase subunit C superfamilyHomologous Superfamily
IPR020537ATP synthase, F0 complex, subunit C, DCCD-binding siteBinding Site
IPR000454ATP synthase, F0 complex, subunit CFamily
IPR002379V-ATPase proteolipid subunit C-like domainDomain
CA [auth J1],
DA [auth K1],
EA [auth L1]
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
BA [auth I1]IPR036742ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrialHomologous Superfamily
BA [auth I1]IPR006721ATP synthase, F1 complex, epsilon subunit, mitochondrialFamily
W [auth D1],
X [auth E1],
Y [auth F1]
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
W [auth D1],
X [auth E1],
Y [auth F1]
IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
W [auth D1],
X [auth E1],
Y [auth F1]
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
W [auth D1],
X [auth E1],
Y [auth F1]
IPR050053ATPase alpha/beta chainsFamily
W [auth D1],
X [auth E1],
Y [auth F1]
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
W [auth D1],
X [auth E1],
Y [auth F1]
IPR055190ATP synthase A/B type, C-terminal domainDomain
W [auth D1],
X [auth E1],
Y [auth F1]
IPR003593AAA+ ATPase domainDomain
W [auth D1],
X [auth E1],
Y [auth F1]
IPR005722ATP synthase, F1 complex, beta subunitFamily
W [auth D1],
X [auth E1],
Y [auth F1]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
T [auth A1],
U [auth B1],
V [auth C1]
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
T [auth A1],
U [auth B1],
V [auth C1]
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
T [auth A1],
U [auth B1],
V [auth C1]
IPR005294ATP synthase, F1 complex, alpha subunitFamily
T [auth A1],
U [auth B1],
V [auth C1]
IPR033732ATP synthase, F1 complex, alpha subunit nucleotide-binding domainDomain
T [auth A1],
U [auth B1],
V [auth C1]
IPR000793ATP synthase, alpha subunit, C-terminalDomain
T [auth A1],
U [auth B1],
V [auth C1]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily