8A8F | pdb_00008a8f

Crystal structure of Glc7 phosphatase in complex with the regulatory region of Ref2

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PI3_PI4_kinase	e8a8fA01	A: a/b three-layered sandwiches	X: Rossmann-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PI3_PI4_kinase	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00149	Calcineurin-like phosphoesterase (Metallophos)	Calcineurin-like phosphoesterase	This family includes a diverse range of phosphoesterases [1], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD Swiss:P13457 or ...	This family includes a diverse range of phosphoesterases [1], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD Swiss:P13457 or yeast MRE11 Swiss:P32829. The most conserved regions in this superfamily centre around the metal chelating residues.	Domain
A	PF16891	Serine-threonine protein phosphatase N-terminal domain (STPPase_N)	Serine-threonine protein phosphatase N-terminal domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	RNA end formation protein 2	chromatin binding binding RNA binding nucleic acid binding	mRNA 3'-end processing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 3'-end processing mRNA 3'-end processing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 3'-end processing metabolic process cellular process RNA processing macromolecule metabolic process assembly of actomyosin apparatus involved in cytokinesis positive regulation of organelle organization regulation of cellular process mitotic actomyosin contractile ring assembly regulation of cytokinesis, actomyosin contractile ring assembly regulation of mitotic cytokinetic process mitotic cytokinetic process regulation of mitotic actomyosin contractile ring assembly cellular component biogenesis cellular component assembly regulation of mitotic cytokinesis positive regulation of cytokinesis cortical actin cytoskeleton organization actin filament-based process positive regulation of cytokinesis, actomyosin contractile ring assembly cell cycle regulation of cytokinesis regulation of biological process assembly of actomyosin apparatus involved in mitotic cytokinesis actomyosin structure organization regulation of cell cycle process cortical cytoskeleton organization positive regulation of cytoskeleton organization cytokinesis regulation of cytokinetic process regulation of organelle organization mitotic cell cycle process cell division regulation of cytoskeleton organization regulation of cellular component organization regulation of actin filament-based process positive regulation of cellular component organization positive regulation of cell division cytoskeleton-dependent cytokinesis positive regulation of mitotic cytokinesis positive regulation of biological process actomyosin contractile ring assembly mitotic cytokinesis mitotic cell cycle regulation of cell division cellular component organization positive regulation of mitotic actomyosin contractile ring assembly positive regulation of mitotic cytokinetic process positive regulation of cell cycle process cellular component organization or biogenesis regulation of cell cycle positive regulation of cellular process cell cycle process actin cytoskeleton organization biological regulation regulation of cellular component biogenesis positive regulation of cell cycle organelle organization regulation of actomyosin structure organization cytokinetic process regulation of actin cytoskeleton organization actomyosin contractile ring organization cytoskeleton organization regulation of localization regulation of protein localization protein localization to cell division site regulation of protein localization to cell division site localization regulation of protein localization to cell division site involved in cytokinesis macromolecule localization intracellular protein localization termination of RNA polymerase II transcription, poly(A)-coupled DNA-templated transcription termination DNA-templated transcription transcription by RNA polymerase II termination of RNA polymerase II transcription sno(s)RNA processing sno(s)RNA 3'-end processing sno(s)RNA metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle organelle mRNA cleavage and polyadenylation specificity factor complex mRNA cleavage factor complex
A	Serine/threonine-protein phosphatase PP1-2	phosphoric ester hydrolase activity phosphoprotein phosphatase activity protein serine/threonine phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process DNA replication metabolic process cellular process macromolecule metabolic process replication fork processing cytoskeleton-dependent cytokinesis mitotic cytokinesis cytokinesis DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process DNA replication metabolic process cellular process macromolecule metabolic process replication fork processing cytoskeleton-dependent cytokinesis mitotic cytokinesis cytokinesis establishment or maintenance of cell polarity mitotic cell cycle establishment of cell polarity mitotic cell cycle process cell cycle cell division cellular bud site selection cell cycle process response to stimulus response to topologically incorrect protein response to stress response to unfolded protein chromosome segregation cellular homeostasis chemical homeostasis homeostatic process monoatomic ion homeostasis intracellular chemical homeostasis intracellular monoatomic ion homeostasis regulation of cell cycle phase transition regulation of cellular process positive regulation of biological process cell cycle phase transition exit from mitosis cellular component organization regulation of mitotic cell cycle positive regulation of mitotic cell cycle phase transition positive regulation of exit from mitosis positive regulation of cell cycle process positive regulation of mitotic cell cycle cellular component organization or biogenesis regulation of cell cycle positive regulation of cellular process regulation of biological process mitotic nuclear division regulation of cell cycle process organelle fission biological regulation positive regulation of cell cycle regulation of mitotic cell cycle phase transition nuclear division organelle organization positive regulation of cell cycle phase transition regulation of exit from mitosis mitotic cell cycle phase transition RNA metabolic process gene expression nucleobase-containing compound biosynthetic process mRNA processing mRNA metabolic process macromolecule biosynthetic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process RNA processing regulation of localization regulation of protein localization protein localization to cell division site regulation of protein localization to cell division site localization regulation of protein localization to cell division site involved in cytokinesis macromolecule localization intracellular protein localization cellular response to stimulus signaling negative regulation of biological process negative regulation of cell cycle intracellular signal transduction cell communication negative regulation of cellular process negative regulation of cell cycle phase transition signal transduction DNA replication checkpoint signaling DNA integrity checkpoint signaling negative regulation of cell cycle process cell cycle checkpoint signaling assembly of actomyosin apparatus involved in cytokinesis positive regulation of organelle organization mitotic actomyosin contractile ring assembly regulation of cytokinesis, actomyosin contractile ring assembly regulation of mitotic cytokinetic process mitotic cytokinetic process regulation of mitotic actomyosin contractile ring assembly cellular component biogenesis cellular component assembly regulation of mitotic cytokinesis positive regulation of cytokinesis cortical actin cytoskeleton organization actin filament-based process positive regulation of cytokinesis, actomyosin contractile ring assembly regulation of cytokinesis assembly of actomyosin apparatus involved in mitotic cytokinesis actomyosin structure organization cortical cytoskeleton organization positive regulation of cytoskeleton organization regulation of cytokinetic process regulation of organelle organization regulation of cytoskeleton organization regulation of cellular component organization regulation of actin filament-based process positive regulation of cellular component organization positive regulation of cell division positive regulation of mitotic cytokinesis actomyosin contractile ring assembly regulation of cell division positive regulation of mitotic actomyosin contractile ring assembly positive regulation of mitotic cytokinetic process actin cytoskeleton organization regulation of cellular component biogenesis regulation of actomyosin structure organization cytokinetic process regulation of actin cytoskeleton organization actomyosin contractile ring organization cytoskeleton organization response to heat response to abiotic stimulus response to temperature stimulus positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process regulation of primary metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process regulation of gene expression positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process DNA damage checkpoint signaling cellular response to stress DNA damage response signal transduction in response to DNA damage import into cell transport vesicle-mediated transport positive regulation of endocytosis clathrin-dependent endocytosis positive regulation of receptor-mediated endocytosis regulation of endocytosis regulation of transport regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport establishment of localization positive regulation of transport positive regulation of clathrin-dependent endocytosis receptor-mediated endocytosis endocytosis regulation of clathrin-dependent endocytosis amino sugar biosynthetic process carbohydrate derivative biosynthetic process chitin biosynthetic process carbohydrate derivative metabolic process chitin metabolic process glucosamine-containing compound biosynthetic process aminoglycan metabolic process amino sugar metabolic process aminoglycan biosynthetic process protein localization to kinetochore protein localization to chromosome protein localization to chromosome, centromeric region protein localization to condensed chromosome protein localization to organelle regulation of glycogen biosynthetic process glucan biosynthetic process energy derivation by oxidation of organic compounds regulation of glucan biosynthetic process regulation of generation of precursor metabolites and energy regulation of polysaccharide metabolic process polysaccharide metabolic process glucan metabolic process regulation of carbohydrate metabolic process carbohydrate metabolic process polysaccharide biosynthetic process carbohydrate biosynthetic process glycogen metabolic process generation of precursor metabolites and energy glycogen biosynthetic process regulation of polysaccharide biosynthetic process energy reserve metabolic process regulation of carbohydrate biosynthetic process regulation of glycogen metabolic process termination of RNA polymerase II transcription, poly(A)-coupled DNA-templated transcription termination termination of RNA polymerase II transcription chromosome organization spindle checkpoint signaling regulation of mitotic nuclear division negative regulation of mitotic cell cycle negative regulation of mitotic sister chromatid segregation negative regulation of chromosome organization mitotic spindle checkpoint signaling mitotic sister chromatid separation negative regulation of sister chromatid segregation mitotic spindle assembly checkpoint signaling negative regulation of cellular component organization sister chromatid segregation regulation of chromosome organization regulation of mitotic sister chromatid segregation regulation of chromosome separation negative regulation of mitotic nuclear division regulation of chromosome segregation regulation of mitotic sister chromatid separation regulation of metaphase/anaphase transition of cell cycle spindle assembly checkpoint signaling regulation of mitotic metaphase/anaphase transition mitotic sister chromatid segregation negative regulation of mitotic metaphase/anaphase transition negative regulation of chromosome separation negative regulation of mitotic cell cycle phase transition mitotic cell cycle checkpoint signaling negative regulation of chromosome segregation negative regulation of nuclear division negative regulation of organelle organization chromosome separation regulation of sister chromatid segregation negative regulation of mitotic sister chromatid separation regulation of nuclear division negative regulation of metaphase/anaphase transition of cell cycle nuclear chromosome segregation metaphase/anaphase transition of mitotic cell cycle metaphase/anaphase transition of cell cycle regulation of cellular component size regulation of protein-containing complex assembly protein-containing complex assembly negative regulation of protein polymerization regulation of actin filament polymerization regulation of biological quality negative regulation of supramolecular fiber organization negative regulation of actin filament polymerization protein polymerization actin polymerization or depolymerization regulation of actin filament organization actin filament polymerization protein-containing complex organization negative regulation of cytoskeleton organization regulation of actin polymerization or depolymerization actin filament organization negative regulation of protein-containing complex assembly regulation of protein polymerization regulation of actin filament length regulation of supramolecular fiber organization supramolecular fiber organization regulation of anatomical structure size telomere organization telomere maintenance developmental process regulation of developmental process regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of anatomical structure morphogenesis regulation of reproductive process regulation of asexual reproduction reproductive process reproductive process in single-celled organism regulation of cell budding asexual reproduction cell budding sexual sporulation resulting in formation of a cellular spore sexual reproduction cellular developmental process meiotic cell cycle cell development developmental process involved in reproduction meiotic cell cycle process sporulation resulting in formation of a cellular spore ascospore formation sexual sporulation cell differentiation anatomical structure formation involved in morphogenesis sporulation response to nutrient levels regulation of response to nutrient levels regulation of cellular response to glucose starvation regulation of cellular response to stress cellular response to starvation cellular response to nutrient levels regulation of response to stimulus regulation of response to stress response to starvation cellular response to glucose starvation	cellular anatomical structure incipient cellular bud site site of polarized growth intracellular anatomical structure cytoplasm cell division site cell cortex cellular bud neck cellular bud intracellular membraneless organelle cleavage apparatus septin structure cell periphery intracellular organelle cellular bud neck septin collar cellular anatomical structure incipient cellular bud site site of polarized growth intracellular anatomical structure cytoplasm cell division site cell cortex cellular bud neck cellular bud intracellular membraneless organelle cleavage apparatus septin structure cell periphery intracellular organelle cellular bud neck septin collar cytoskeleton organelle cellular bud neck septin structure septin cytoskeleton membraneless organelle septin collar membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle nucleolus intracellular organelle lumen organelle lumen nuclear lumen phosphatase complex protein-containing complex protein phosphatase type 1 complex catalytic complex protein serine/threonine phosphatase complex chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome microtubule organizing center spindle pole body microtubule cytoskeleton cell projection mating projection base mating projection plasma membrane bounded cell projection nuclear protein-containing complex mRNA cleavage and polyadenylation specificity factor complex mRNA cleavage factor complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR050341	Serine/threonine-protein phosphatase PP1 catalytic subunit	Family
A	IPR029052	Metallo-dependent phosphatase-like	Homologous Superfamily
A	IPR004843	Calcineurin-like, phosphoesterase domain	Domain
A	IPR031675	Serine-threonine protein phosphatase, N-terminal	Domain
A	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.