7ZEU | pdb_00007zeu

Crystal structure of human Clusterin, crystal form II

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth D]	PF01093	Clusterin (Clusterin)	Clusterin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth D]	Clusterin	amide binding amyloid-beta binding binding peptide binding protein binding misfolded protein binding protein carrier chaperone molecular carrier activity protein-folding chaperone binding cytoskeletal protein binding tau protein binding protein-containing complex binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding amide binding amyloid-beta binding binding peptide binding protein binding misfolded protein binding protein carrier chaperone molecular carrier activity protein-folding chaperone binding cytoskeletal protein binding tau protein binding protein-containing complex binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding signaling receptor binding molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity unfolded protein binding low-density lipoprotein particle receptor binding lipoprotein particle receptor binding	regulation of biosynthetic process regulation of nitric oxide biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process reactive nitrogen species metabolic process nitric oxide metabolic process positive regulation of metabolic process nitric oxide biosynthetic process biosynthetic process positive regulation of biosynthetic process cellular process metabolic process regulation of biosynthetic process regulation of nitric oxide biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process reactive nitrogen species metabolic process nitric oxide metabolic process positive regulation of metabolic process nitric oxide biosynthetic process biosynthetic process positive regulation of biosynthetic process cellular process metabolic process regulation of nitric oxide metabolic process positive regulation of nitric oxide biosynthetic process regulation of metabolic process positive regulation of cellular process regulation of protein stability regulation of biological quality protein stabilization adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity humoral immune response response to stimulus positive regulation of response to stimulus complement activation humoral immune response mediated by circulating immunoglobulin positive regulation of immune response leukocyte mediated immunity regulation of immune system process positive regulation of immune system process complement activation, classical pathway immune response immunoglobulin mediated immune response adaptive immune response immune effector process regulation of response to stimulus immune system process B cell mediated immunity regulation of immune response activation of immune response localization transport macromolecule localization reverse cholesterol transport lipid localization cholesterol transport lipid transport sterol transport organic hydroxy compound transport establishment of localization regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of gene expression regulation of macromolecule biosynthetic process positive regulation of macromolecule metabolic process macromolecule metabolic process positive regulation of cellular component organization regulation of cellular component organization protein-containing complex organization positive regulation of cellular component biogenesis regulation of cellular component biogenesis cellular component organization cellular component biogenesis positive regulation of protein-containing complex assembly regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly cellular component organization or biogenesis immune complex clearance positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death biological process involved in interspecies interaction between organisms response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus defense response to other organism response to stress innate immune response response to external biotic stimulus positive regulation of proteasomal protein catabolic process catabolic process positive regulation of protein metabolic process proteolysis involved in protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of ubiquitin-dependent protein catabolic process regulation of primary metabolic process positive regulation of ubiquitin-dependent protein catabolic process regulation of proteolysis regulation of proteolysis involved in protein catabolic process modification-dependent macromolecule catabolic process proteolysis protein metabolic process regulation of protein metabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of proteolysis involved in protein catabolic process positive regulation of catabolic process regulation of proteasomal ubiquitin-dependent protein catabolic process modification-dependent protein catabolic process positive regulation of proteolysis regulation of proteasomal protein catabolic process positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process regulation of protein catabolic process negative regulation of cellular component organization negative regulation of biological process negative regulation of protein-containing complex assembly negative regulation of cellular process regulation of inclusion body assembly inclusion body assembly positive regulation of neurofibrillary tangle assembly neurofibrillary tangle assembly regulation of neurofibrillary tangle assembly positive regulation of inclusion body assembly cellular response to stimulus signaling negative regulation of signaling apoptotic mitochondrial changes regulation of signal transduction regulation of release of cytochrome c from mitochondria negative regulation of cell communication cell communication negative regulation of release of cytochrome c from mitochondria negative regulation of apoptotic signaling pathway signal transduction mitochondrion organization regulation of signaling negative regulation of response to stimulus negative regulation of programmed cell death negative regulation of signal transduction regulation of organelle organization apoptotic signaling pathway organelle organization release of cytochrome c from mitochondria negative regulation of apoptotic process negative regulation of organelle organization regulation of mitochondrion organization regulation of cell communication regulation of apoptotic signaling pathway positive regulation of DNA-binding transcription factor activity positive regulation of NF-kappaB transcription factor activity RNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process positive regulation of molecular function nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of molecular function regulation of DNA-binding transcription factor activity regulation of DNA-templated transcription developmental process anatomical structure morphogenesis anatomical structure development cell morphogenesis establishment of protein localization cellular localization nitrogen compound transport protein targeting to vacuole involved in autophagy protein targeting autophagy establishment of protein localization to vacuole protein targeting to lysosome involved in chaperone-mediated autophagy lysosomal transport chaperone-mediated autophagy protein targeting to lysosome establishment of localization in cell intracellular protein localization process utilizing autophagic mechanism protein targeting to vacuole intracellular transport protein localization to vacuole protein localization to lysosome establishment of protein localization to organelle protein transport protein localization to organelle vacuolar transport intracellular protein transport regulation of localization import into cell vesicle-mediated transport positive regulation of endocytosis positive regulation of receptor-mediated endocytosis regulation of endocytosis regulation of transport regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport positive regulation of transport endocytosis receptor-mediated endocytosis amyloid precursor protein catabolic process regulation of amide metabolic process regulation of amyloid-beta formation regulation of amyloid precursor protein catabolic process negative regulation of amyloid precursor protein catabolic process amyloid-beta metabolic process amide metabolic process amyloid precursor protein metabolic process negative regulation of protein metabolic process amyloid-beta formation negative regulation of macromolecule metabolic process negative regulation of amyloid-beta formation negative regulation of amide metabolic process negative regulation of metabolic process positive regulation of cell communication positive regulation of signal transduction regulation of intrinsic apoptotic signaling pathway intracellular signal transduction positive regulation of apoptotic signaling pathway regulation of intracellular signal transduction intrinsic apoptotic signaling pathway positive regulation of intracellular signal transduction positive regulation of intrinsic apoptotic signaling pathway positive regulation of signaling multicellular organismal process regulation of multicellular organismal process regulation of amyloid-beta clearance amyloid-beta clearance negative regulation of intracellular signal transduction regulation of cellular response to stress regulation of intrinsic apoptotic signaling pathway in response to DNA damage cellular response to stress regulation of response to stress intrinsic apoptotic signaling pathway in response to DNA damage negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage negative regulation of intrinsic apoptotic signaling pathway DNA damage response response to misfolded protein response to topologically incorrect protein cell activation myeloid leukocyte activation leukocyte activation macrophage activation leukocyte activation involved in inflammatory response microglial cell activation inflammatory response glial cell activation neuroinflammatory response chaperone-mediated protein complex assembly positive regulation of amyloid fibril formation regulation of amyloid fibril formation amyloid fibril formation positive regulation of supramolecular fiber organization regulation of supramolecular fiber organization supramolecular fiber organization neuronal signal transduction regulation of neuronal signal transduction cellular developmental process cell development glial cell development multicellular organism development neurogenesis gliogenesis axon ensheathment ensheathment of neurons cell differentiation plasma membrane organization endomembrane system organization system development membrane organization oligodendrocyte development central nervous system myelination nervous system development central nervous system myelin maintenance myelination axon ensheathment in central nervous system central nervous system development oligodendrocyte differentiation glial cell differentiation myelin maintenance lipid metabolic process neuron apoptotic process negative regulation of neuron apoptotic process regulation of neuron apoptotic process positive regulation of amyloid-beta formation positive regulation of amide metabolic process positive regulation of amyloid precursor protein catabolic process protein import cell population proliferation regulation of cell population proliferation microglial cell proliferation leukocyte proliferation macrophage proliferation glial cell proliferation response to virus negative regulation of response to endoplasmic reticulum stress regulation of response to endoplasmic reticulum stress response to endoplasmic reticulum stress regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production cytokine production regulation of cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production positive regulation of multicellular organismal process positive regulation of cytokine production negative regulation of amyloid fibril formation negative regulation of supramolecular fiber organization	membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle cellular anatomical structure organelle lumen perinuclear endoplasmic reticulum perinuclear region of cytoplasm organelle endoplasmic reticulum membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle cellular anatomical structure organelle lumen perinuclear endoplasmic reticulum perinuclear region of cytoplasm organelle endoplasmic reticulum perinuclear endoplasmic reticulum lumen cytoplasm extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle cytosol Golgi apparatus neurofibrillary tangle inclusion body vesicle lumen intracellular vesicle cytoplasmic vesicle lumen secretory granule lumen cytoplasmic vesicle secretory granule secretory vesicle platelet alpha granule platelet alpha granule lumen chromaffin granule mitochondrion mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope organelle membrane cell surface spherical high-density lipoprotein particle protein-containing complex plasma lipoprotein particle high-density lipoprotein particle lipoprotein particle protein-lipid complex blood microparticle synapse cell junction somatodendritic compartment apical dendrite cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth D]	IPR016016	Clusterin	Family
A, B [auth D]	IPR016015	Clusterin, C-terminal	Domain
A, B [auth D]	IPR033986	Clusterin, conserved site	Conserved Site
A, B [auth D]	IPR016014	Clusterin, N-terminal	Domain
A, B [auth D]	IPR000753	Clusterin-like	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B [auth D]	Pharos: P10909	Alzheimer disease melanoma juvenile idiopathic arthritis kidney disease visual epilepsy amyotrophic lateral sclerosis type 1 prostate cancer Atrophy gelatinous drop-like corneal dystrophy nasopharyngeal carcinoma autism spectrum disorder glioblastoma non-small cell lung carcinoma breast carcinoma osteoarthritis Alzheimer disease melanoma juvenile idiopathic arthritis kidney disease visual epilepsy amyotrophic lateral sclerosis type 1 prostate cancer Atrophy gelatinous drop-like corneal dystrophy nasopharyngeal carcinoma autism spectrum disorder glioblastoma non-small cell lung carcinoma breast carcinoma osteoarthritis ovarian cancer pancreatic intraductal papillary-mucinous neoplasm ABri amyloidosis pituitary cancer cystic fibrosis acute kidney failure lattice corneal dystrophy ADan amyloidosis lung adenocarcinoma Emery-Dreifuss muscular dystrophy anorexia nervosa exocrine pancreatic carcinoma malignant pancreatic neoplasm atopic eczema subependymal giant cell astrocytoma gastric carcinoma attention deficit hyperactivity disorder, inattentive type bipolar disorder osteoarthritis susceptibility 1 cannabis dependence hepatocellular carcinoma pancreatic ductal adenocarcinoma chronic kidney disease pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia dementia psoriasis Duchenne muscular dystrophy lung cancer malignant colon neoplasm astrocytic tumor sinusitis medulloblastoma systemic lupus erythematosus Gaucher disease myopathy atypical teratoid rhabdoid tumor ulcerative colitis breast cancer invasive ductal breast carcinoma pancreatic intraductal papillary-mucinous carcinoma juvenile dermatomyositis cutaneous melanoma large cell medulloblastoma schizophrenia drug-induced liver injury limb-girdle muscular dystrophy ductal breast carcinoma in situ lung carcinoma malignant mesothelioma Sjogren syndrome gastric cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.