7YWD | pdb_00007ywd

Human GDAP1 core domain, trigonal crystal form

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PhnJ	e7ywdA1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PhnJ	ECOD (v294.1)
B	PhnJ	e7ywdB1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PhnJ	ECOD (v294.1)
C	PhnJ	e7ywdC1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PhnJ	ECOD (v294.1)
D	PhnJ	e7ywdD1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PhnJ	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF13417	Glutathione S-transferase, N-terminal domain (GST_N_3)	Glutathione S-transferase, N-terminal domain		Domain
A, B, C, D	PF13410	Glutathione S-transferase, C-terminal domain (GST_C_2)	Glutathione S-transferase, C-terminal domain	This domain is closely related to Pfam:PF00043.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Ganglioside-induced differentiation-associated protein 1	-	organelle fusion cellular component organization organelle organization cellular process mitochondrial fusion cellular component organization or biogenesis mitochondrion organization response to retinoic acid response to lipid response to stimulus response to chemical response to oxygen-containing compound organelle fission mitochondrial fission organelle fusion cellular component organization organelle organization cellular process mitochondrial fusion cellular component organization or biogenesis mitochondrion organization response to retinoic acid response to lipid response to stimulus response to chemical response to oxygen-containing compound organelle fission mitochondrial fission cellular response to stimulus response to nutrient levels response to nutrient response to vitamin cellular response to oxygen-containing compound cellular response to vitamin D cellular response to nutrient levels cellular response to chemical stimulus response to vitamin D cellular response to vitamin cellular response to lipid cellular response to nutrient	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane cytosol mitochondrial membrane organelle outer membrane organelle envelope bounding membrane of organelle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane cytosol mitochondrial membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane peroxisome microbody membrane peroxisomal membrane microbody nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR010987	Glutathione S-transferase, C-terminal-like	Domain
A, B, C, D	IPR004045	Glutathione S-transferase, N-terminal	Domain
A, B, C, D	IPR034336	Ganglioside-induced differentiation-associated protein 1, C-terminal domain	Domain
A, B, C, D	IPR036282	Glutathione S-transferase, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily
A, B, C, D	IPR040079	Glutathione transferase family	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q8TB36	Charcot-Marie-Tooth disease type 4A Charcot-Marie-Tooth disease, axonal, with vocal cord paresis, autosomal recessive Charcot-Marie-Tooth disease Charcot-Marie-Tooth disease recessive intermediate A peripheral neuropathy Charcot-Marie-Tooth disease axonal type 2K malignant mesothelioma motor peripheral neuropathy ovarian cancer peripheral nervous system disease Alzheimer disease pilocytic astrocytoma atypical teratoid rhabdoid tumor Charcot-Marie-Tooth disease axonal type 2H glioblastoma Charcot-Marie-Tooth disease type 4A Charcot-Marie-Tooth disease, axonal, with vocal cord paresis, autosomal recessive Charcot-Marie-Tooth disease Charcot-Marie-Tooth disease recessive intermediate A peripheral neuropathy Charcot-Marie-Tooth disease axonal type 2K malignant mesothelioma motor peripheral neuropathy ovarian cancer peripheral nervous system disease Alzheimer disease pilocytic astrocytoma atypical teratoid rhabdoid tumor Charcot-Marie-Tooth disease axonal type 2H glioblastoma large cell medulloblastoma malignant ependymoma medulloblastoma myopathy pancreatic intraductal papillary-mucinous neoplasm arthrogryposis subependymal giant cell astrocytoma autosomal dominant Charcot-Marie-Tooth disease type 2K intellectual disability lung cancer malignant glioma Mitochondrial Diseases neurodegenerative disease pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Pick disease astrocytic tumor juvenile dermatomyositis lung carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.