7YV9 | pdb_00007yv9

Cryo-EM structure of full-length Myosin Va in the autoinhibited state

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
NEF-hand_7_8e7yv9N1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_8ECOD (1.6)
NEF-hand_7_5e7yv9N2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_5ECOD (1.6)
MEF-hand_7_8e7yv9M1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_8ECOD (1.6)
MEF-hand_7_5e7yv9M2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_5ECOD (1.6)
LEF-hand_7_8e7yv9L1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_8ECOD (1.6)
LEF-hand_7_5e7yv9L2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_5ECOD (1.6)
KEF-hand_7_8e7yv9K2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_8ECOD (1.6)
KEF-hand_7_5e7yv9K1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_5ECOD (1.6)
JEF-hand_7_8e7yv9J2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_8ECOD (1.6)
JEF-hand_7_5e7yv9J1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_5ECOD (1.6)
IEF-hand_7_8e7yv9I1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_8ECOD (1.6)
IEF-hand_7_5e7yv9I2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_5ECOD (1.6)
GEF-hand_7_8e7yv9G1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_8ECOD (1.6)
GEF-hand_7_5e7yv9G2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_5ECOD (1.6)
FEF-hand_7_8e7yv9F2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_8ECOD (1.6)
FEF-hand_7_5e7yv9F1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_5ECOD (1.6)
EEF-hand_7_8e7yv9E1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_8ECOD (1.6)
EEF-hand_7_5e7yv9E2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_5ECOD (1.6)
DEF-hand_7_8e7yv9D2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_8ECOD (1.6)
DEF-hand_7_5e7yv9D1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_5ECOD (1.6)
CEF-hand_7_8e7yv9C1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_8ECOD (1.6)
CEF-hand_7_5e7yv9C2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_5ECOD (1.6)
BEF-hand_7_8e7yv9B2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_8ECOD (1.6)
BEF-hand_7_5e7yv9B1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_7_5ECOD (1.6)
P [auth Y]DILe7yv9Y1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: DILECOD (1.6)
O [auth X]DILe7yv9X1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: DILECOD (1.6)
HMyosin_N_1e7yv9H3 A: beta barrelsX: SH3H: SH3T: SH3F: Myosin_N_1ECOD (1.6)
HIQ_1e7yv9H2 A: alpha bundlesX: Myosin VI lever arm (From Topology)H: Myosin VI lever arm (From Topology)T: Myosin VI lever armF: IQ_1ECOD (1.6)
HMyosin_heade7yv9H1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Myosin_headECOD (1.6)
AMyosin_N_1e7yv9A3 A: beta barrelsX: SH3H: SH3T: SH3F: Myosin_N_1ECOD (1.6)
AIQ_1e7yv9A2 A: alpha bundlesX: Myosin VI lever arm (From Topology)H: Myosin VI lever arm (From Topology)T: Myosin VI lever armF: IQ_1ECOD (1.6)
AMyosin_heade7yv9A1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Myosin_headECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, C, D, E, F
PF13499EF-hand domain pair (EF-hand_7)EF-hand domain pairDomain
A,
H,
O [auth X],
P [auth Y]		PF00612IQ calmodulin-binding motif (IQ)IQ calmodulin-binding motif- Motif
A,
H,
O [auth X],
P [auth Y]		PF01843DIL domain (DIL)DIL domain- Repeat
A,
H,
O [auth X],
P [auth Y]		PF00063Myosin head (motor domain) (Myosin_head)Myosin head (motor domain)Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, C, D, E, F
Calmodulin-1
A,
H,
O [auth X],
P [auth Y]		Unconventional myosin-Va

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B, C, D, E, F
IPR002048EF-hand domainDomain
B, C, D, E, F
IPR050230Calmodulin/Myosin light chain/Troponin C-likeFamily
B, C, D, E, F
IPR018247EF-Hand 1, calcium-binding siteBinding Site
B, C, D, E, F
IPR011992EF-hand domain pairHomologous Superfamily
A,
H,
O [auth X],
P [auth Y]		IPR002710Dilute domainDomain
A,
H,
O [auth X],
P [auth Y]		IPR000048IQ motif, EF-hand binding siteBinding Site
A,
H,
O [auth X],
P [auth Y]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A,
H,
O [auth X],
P [auth Y]		IPR004009Myosin, SH3 domainDomain
A,
H,
O [auth X],
P [auth Y]		IPR036961Kinesin motor domain superfamilyHomologous Superfamily
A,
H,
O [auth X],
P [auth Y]		IPR001609Myosin head, motor domain-likeDomain
A,
H,
O [auth X],
P [auth Y]		IPR036103Class V myosin, motor domainDomain
A,
H,
O [auth X],
P [auth Y]		IPR037988Myosin 5a, cargo-binding domainDomain