7YL9 | pdb_00007yl9

Cryo-EM structure of complete transmembrane channel E289A mutant Vibrio cholerae Cytolysin

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G [auth N]	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
G [auth N]	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
G [auth N]	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
F [auth M]	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
F [auth M]	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
F [auth M]	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
E [auth L]	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
E [auth L]	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
E [auth L]	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
D [auth K]	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
D [auth K]	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
D [auth K]	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
C [auth J]	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
C [auth J]	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
C [auth J]	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
B [auth I]	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
B [auth I]	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)
B [auth I]	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
A [auth H]	SCOP2B Superfamily	Ricin B-like lectins	8091099	3000678	SCOP2B (2022-06-29)
A [auth H]	SCOP2B Superfamily	Leukocidin-like	8091101	3000256	SCOP2B (2022-06-29)
A [auth H]	SCOP2B Superfamily	Mannose-binding lectins	8091096	3001715	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G [auth N]	Leukocidin_1	e7yl9N2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Leukocidin-like (From Topology)	T: Leukocidin-like	F: Leukocidin_1	ECOD (1.6)
G [auth N]	Ricin_B_lectin	e7yl9N1	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Ricin_B_lectin	ECOD (1.6)
G [auth N]	Beta-prism_lec	e7yl9N3	A: beta duplicates or obligate multimers	X: beta-Prism I (From Topology)	H: beta-Prism I (From Topology)	T: beta-Prism I	F: Beta-prism_lec	ECOD (1.6)
F [auth M]	Leukocidin_1	e7yl9M1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Leukocidin-like (From Topology)	T: Leukocidin-like	F: Leukocidin_1	ECOD (1.6)
F [auth M]	Ricin_B_lectin	e7yl9M3	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Ricin_B_lectin	ECOD (1.6)
F [auth M]	Beta-prism_lec	e7yl9M2	A: beta duplicates or obligate multimers	X: beta-Prism I (From Topology)	H: beta-Prism I (From Topology)	T: beta-Prism I	F: Beta-prism_lec	ECOD (1.6)
E [auth L]	Leukocidin_1	e7yl9L1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Leukocidin-like (From Topology)	T: Leukocidin-like	F: Leukocidin_1	ECOD (1.6)
E [auth L]	Ricin_B_lectin	e7yl9L2	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Ricin_B_lectin	ECOD (1.6)
E [auth L]	Beta-prism_lec	e7yl9L3	A: beta duplicates or obligate multimers	X: beta-Prism I (From Topology)	H: beta-Prism I (From Topology)	T: beta-Prism I	F: Beta-prism_lec	ECOD (1.6)
D [auth K]	Leukocidin_1	e7yl9K1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Leukocidin-like (From Topology)	T: Leukocidin-like	F: Leukocidin_1	ECOD (1.6)
D [auth K]	Ricin_B_lectin	e7yl9K2	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Ricin_B_lectin	ECOD (1.6)
D [auth K]	Beta-prism_lec	e7yl9K3	A: beta duplicates or obligate multimers	X: beta-Prism I (From Topology)	H: beta-Prism I (From Topology)	T: beta-Prism I	F: Beta-prism_lec	ECOD (1.6)
C [auth J]	Leukocidin_1	e7yl9J1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Leukocidin-like (From Topology)	T: Leukocidin-like	F: Leukocidin_1	ECOD (1.6)
C [auth J]	Ricin_B_lectin	e7yl9J3	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Ricin_B_lectin	ECOD (1.6)
C [auth J]	Beta-prism_lec	e7yl9J2	A: beta duplicates or obligate multimers	X: beta-Prism I (From Topology)	H: beta-Prism I (From Topology)	T: beta-Prism I	F: Beta-prism_lec	ECOD (1.6)
B [auth I]	Leukocidin_1	e7yl9I3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Leukocidin-like (From Topology)	T: Leukocidin-like	F: Leukocidin_1	ECOD (1.6)
B [auth I]	Ricin_B_lectin	e7yl9I1	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Ricin_B_lectin	ECOD (1.6)
B [auth I]	Beta-prism_lec	e7yl9I2	A: beta duplicates or obligate multimers	X: beta-Prism I (From Topology)	H: beta-Prism I (From Topology)	T: beta-Prism I	F: Beta-prism_lec	ECOD (1.6)
A [auth H]	Leukocidin_1	e7yl9H3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Leukocidin-like (From Topology)	T: Leukocidin-like	F: Leukocidin_1	ECOD (1.6)
A [auth H]	Ricin_B_lectin	e7yl9H1	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Ricin_B_lectin	ECOD (1.6)
A [auth H]	Beta-prism_lec	e7yl9H2	A: beta duplicates or obligate multimers	X: beta-Prism I (From Topology)	H: beta-Prism I (From Topology)	T: beta-Prism I	F: Beta-prism_lec	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N]	PF07968	Leukocidin/Hemolysin toxin family (Leukocidin)	Leukocidin/Hemolysin toxin family		Domain
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N]	PF16458	Beta-prism lectin (Beta-prism_lec)	Beta-prism lectin	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N]	Hemolysin	binding carbohydrate binding toxin activity identical protein binding protein binding	biological process involved in interspecies interaction between organisms cytolysis in another organism cellular process disruption of cell in another organism disruption of anatomical structure in another organism cytolysis killing of cells of another organism cell killing	cellular anatomical structure membrane extracellular region host cell plasma membrane host cellular component host cell part host cell membrane other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N]	IPR043080	Hemolytic toxin, N-terminal domain superfamily	Homologous Superfamily
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N]	IPR016183	Leukocidin/Hemolysin toxin	Domain
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N]	IPR036435	Leukocidin/porin MspA superfamily	Homologous Superfamily
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N]	IPR022220	Hemolytic toxin, N-terminal	Domain
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N]	IPR044883	Hemolysin, pre-stem domain	Homologous Superfamily
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N]	IPR036404	Jacalin-like lectin domain superfamily	Homologous Superfamily
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N]	IPR032496	Hemolysin, beta-prism lectin	Domain
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N]	IPR035992	Ricin B-like lectins	Homologous Superfamily
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N]	IPR000772	Ricin B, lectin domain	Domain

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L] A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N]	OPM	Monotopic/peripheral	All beta monotopic/peripheral	Beta-prisms	Beta-prism lectin

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L] A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N]	PDBTM	Annotated as membrane protein by PDBTM