7YCA | pdb_00007yca

Cryo-EM structure of the PSI-LHCI-Lhcp supercomplex from Ostreococcus tauri


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth C]Ald_Xan_dh_Ce7ycaC1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
H [auth B]Ald_Xan_dh_Ce7ycaB1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
G [auth A]Ald_Xan_dh_Ce7ycaA1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
F [auth 6]TPR_1, TPR_11, TPR_12, TPR_16e7yca601 A: alpha arraysX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: TPR_1, TPR_11, TPR_12, TPR_16ECOD (v295.2)
E [auth 5]Ald_Xan_dh_Ce7yca51 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
D [auth 4]Ald_Xan_dh_Ce7yca41 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
C [auth 3]Ald_Xan_dh_Ce7yca31 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
W [auth Q]Ald_Xan_dh_Ce7ycaQ1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
Z [auth T]Ald_Xan_dh_Ce7ycaT1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
Y [auth S]Ald_Xan_dh_Ce7ycaS1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
X [auth R]Ald_Xan_dh_Ce7ycaR1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
V [auth P]Ald_Xan_dh_Ce7ycaP1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
DA [auth X]Ald_Xan_dh_Ce7ycaX1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
CA [auth W]Ald_Xan_dh_Ce7ycaW1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
BA [auth V]Ald_Xan_dh_Ce7ycaV1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
AA [auth U]Ald_Xan_dh_Ce7ycaU1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
T [auth N]Ald_Xan_dh_Ce7ycaN1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
B [auth 2]Ald_Xan_dh_Ce7yca21 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
S [auth M]Ald_Xan_dh_Ce7ycaM1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
R [auth L]Ald_Xan_dh_Ce7ycaL1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
Q [auth K]Ald_Xan_dh_Ce7ycaK1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
P [auth J]Ald_Xan_dh_Ce7ycaJ1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
O [auth I]Ald_Xan_dh_Ce7ycaI1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
N [auth H]Ald_Xan_dh_Ce7ycaH1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
M [auth G]Ald_Xan_dh_Ce7ycaG1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
L [auth F]Ald_Xan_dh_Ce7ycaF1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
K [auth E]Ald_Xan_dh_Ce7ycaE1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
J [auth D]Ald_Xan_dh_Ce7ycaD1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)
A [auth 1]Ald_Xan_dh_Ce7yca11 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Ald_Xan_dh_CECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
W [auth Q]1.10.3460.10 Mainly Alpha Orthogonal Bundle Chlorophyll a-b binding protein Chlorophyll a/b binding protein domainCATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth C]Photosystem I iron-sulfur center
H [auth B]Photosystem I P700 chlorophyll a apoprotein A2
G [auth A]Photosystem I P700 chlorophyll a apoprotein A1
F [auth 6]Lhca6-
E [auth 5]Chlorophyll a-b binding protein, chloroplastic-
D [auth 4]Chlorophyll a-b binding protein, chloroplastic---
C [auth 3]Chlorophyll a-b binding protein, chloroplastic-
W [auth Q]Chlorophyll a-b binding protein, chloroplastic-
Chlorophyll a-b binding protein, chloroplastic-
U [auth O]PsaO- - -
T [auth N]Photosystem I PsaN, reaction centre subunit N-
B [auth 2]Chlorophyll a-b binding protein, chloroplastic---
S [auth M]Photosystem I reaction center subunit XII-
R [auth L]PSI subunit V-
Q [auth K]Photosystem I PsaG/PsaK protein-
P [auth J]Photosystem I reaction center subunit IX-
O [auth I]Photosystem I reaction center subunit VIII-
N [auth H]Photosystem I PsaH, reaction centre subunit VI-
M [auth G]PsaG-
L [auth F]Photosystem I reaction center subunit III-
K [auth E]Photosystem I reaction centre subunit IV---
J [auth D]Photosystem I reaction center subunit II, chloroplastic---
A [auth 1]Lhca1---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth C]IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
I [auth C]IPR050157Photosystem I iron-sulfur centerFamily
I [auth C]IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
I [auth C]IPR017491Photosystem I protein PsaCFamily
H [auth B]IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
H [auth B]IPR001280Photosystem I PsaA/PsaBFamily
H [auth B]IPR006244Photosystem I PsaBFamily
H [auth B]IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
G [auth A]IPR006243Photosystem I PsaAFamily
G [auth A]IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
G [auth A]IPR001280Photosystem I PsaA/PsaBFamily
G [auth A]IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
F [auth 6]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
F [auth 6]IPR022796Chlorophyll A-B binding proteinFamily
E [auth 5]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
E [auth 5]IPR022796Chlorophyll A-B binding proteinFamily
C [auth 3]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
C [auth 3]IPR022796Chlorophyll A-B binding proteinFamily
W [auth Q]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
W [auth Q]IPR022796Chlorophyll A-B binding proteinFamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
U [auth O]IPR017498Photosystem I PsaOFamily
T [auth N]IPR008796Photosystem I reaction centre subunit N, chloroplasticFamily
T [auth N]IPR044907Photosystem I reaction centre subunit N superfamilyHomologous Superfamily
S [auth M]IPR010010Photosystem I PsaM, reaction centreFamily
S [auth M]IPR037279Photosystem I PsaM, reaction centre superfamilyHomologous Superfamily
R [auth L]IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
R [auth L]IPR022980Photosystem I, reaction centre subunit XIFamily
R [auth L]IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
Q [auth K]IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
Q [auth K]IPR000549Photosystem I reaction center subunit V/PsaKFamily
P [auth J]IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
P [auth J]IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
O [auth I]IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
O [auth I]IPR001302Photosystem I reaction centre subunit VIIIFamily
N [auth H]IPR004928Photosystem I PsaH, reaction centre subunit VIFamily
M [auth G]IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
M [auth G]IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
M [auth G]IPR000549Photosystem I reaction center subunit V/PsaKFamily
L [auth F]IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
L [auth F]IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
W [auth Q]ACE AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

:  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359
W [auth Q]TPO Parent Component: THR

AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 , AA0038

:  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 , O-phospho-L-threonine MOD:00047