7YB4 | pdb_00007yb4

Solution structure of homeodomain of EXTRADENTICLE

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Homeodomain-like	8057620	3000001	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Sulfotransfer_4	e7yb4A1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Sulfotransfer_4	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF05920	Homeobox KN domain (Homeobox_KN)	Homeobox KN domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Homeobox protein extradenticle	transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity protein heterodimerization activity protein binding binding protein dimerization activity transcription coactivator activity DNA-binding transcription factor activity sequence-specific DNA binding DNA binding nucleic acid binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity protein heterodimerization activity protein binding binding protein dimerization activity transcription coactivator activity DNA-binding transcription factor activity sequence-specific DNA binding DNA binding nucleic acid binding DNA-binding transcription factor activity, RNA polymerase II-specific sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding cis-regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding transcription factor binding DNA-binding transcription factor binding	developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development anatomical structure morphogenesis animal organ morphogenesis gland development pattern specification process developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development anatomical structure morphogenesis animal organ morphogenesis gland development pattern specification process salivary gland development formation of anatomical boundary salivary gland boundary specification regionalization anatomical structure formation involved in morphogenesis formation of animal organ boundary animal organ formation exocrine system development muscle structure development somatic muscle development regulation of biological process regulation of cellular process regulation of developmental process cellular developmental process regulation of cell fate commitment biological regulation cell fate specification regulation of cell fate specification cell differentiation cellular process cell fate commitment embryonic organ development embryo development peripheral nervous system development positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process oenocyte development oenocyte differentiation cell development sensory organ development eye development visual system development sensory system development transcription by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II generation of neurons neurogenesis neuron differentiation neuron development	RNA polymerase II transcription regulator complex membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle cytoplasm protein-DNA complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR050224	Three Amino acid Loop Extension (TALE) homeobox	Family
A	IPR017970	Homeobox, conserved site	Conserved Site
A	IPR008422	KN homeodomain	Domain
A	IPR005542	PBX, PBC domain	Domain
A	IPR009057	Homedomain-like superfamily	Homologous Superfamily
A	IPR001356	Homeodomain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.