7XNO | pdb_00007xno

Cryo-EM structure of the bacteriocin-receptor-immunity ternary complex from Lactobacillus sakei

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth B]	PhnJ	e7xnoB1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PhnJ	ECOD (v294.1)
L [auth J]	PhnJ	e7xnoJ1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PhnJ	ECOD (v294.1)
H [auth F]	PhnJ	e7xnoF1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PhnJ	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth Z], G [auth E], K [auth I]	PF03613	PTS system mannose/fructose/sorbose family IID component (EIID-AGA)	PTS system mannose/fructose/sorbose family IID component	-	Family
B [auth Y], F [auth D], J [auth H]	PF03609	PTS system sorbose-specific iic component (EII-Sor)	PTS system sorbose-specific iic component	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth B], H [auth F], L [auth J]	Sakacin-A immunity factor	-	metabolic process cellular process bacteriocin immunity toxin metabolic process secondary metabolic process	-
C [auth Z], G [auth E], K [auth I]	Mannose permease IID component	transferase activity catalytic activity	import into cell phosphoenolpyruvate-dependent sugar phosphotransferase system transport import across plasma membrane carbohydrate import across plasma membrane carbohydrate transport establishment of localization transmembrane transport localization cellular process carbohydrate transmembrane transport	cell periphery cellular anatomical structure plasma membrane membrane
B [auth Y], F [auth D], J [auth H]	Mannose permease IIC component	transferase activity catalytic activity	import into cell phosphoenolpyruvate-dependent sugar phosphotransferase system transport import across plasma membrane carbohydrate import across plasma membrane carbohydrate transport establishment of localization transmembrane transport localization cellular process carbohydrate transmembrane transport	cell periphery cellular anatomical structure plasma membrane membrane
A, E [auth C], I [auth G]	Bacteriocin sakacin-A	-	defense response to bacterium biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus cellular process disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism defense response to bacterium biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus cellular process disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism cell killing	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth Z], G [auth E], K [auth I]	IPR050303	GatZ/KbaZ carbohydrate metabolism	Family
C [auth Z], G [auth E], K [auth I]	IPR004704	Phosphotransferase system, mannose/fructose/sorbose family IID component	Family
B [auth Y], F [auth D], J [auth H]	IPR050303	GatZ/KbaZ carbohydrate metabolism	Family
B [auth Y], F [auth D], J [auth H]	IPR004700	Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit	Family
A, E [auth C], I [auth G]	IPR002633	Bacteriocin, class IIa	Family
A, E [auth C], I [auth G]	IPR023388	Bacteriocin class IIa domain superfamily	Homologous Superfamily
A, E [auth C], I [auth G]	IPR023384	Bacteriocin, class IIa, conserved site	Conserved Site
A, E [auth C], I [auth G]	IPR010133	Bacteriocin-type signal sequence	Conserved Site

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
B [auth Y], C [auth Z], F [auth D], G [auth E], J [auth H] B [auth Y], C [auth Z], F [auth D], G [auth E], J [auth H], K [auth I]	OPM	Transmembrane	Alpha-helical polytopic	PTS system mannose/fructose/sorbose family	PTS system mannose/fructose/sorbose family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
B [auth Y], C [auth Z], F [auth D], G [auth E], J [auth H] B [auth Y], C [auth Z], F [auth D], G [auth E], J [auth H], K [auth I]	PDBTM	Annotated as membrane protein by PDBTM

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.