7XHO | pdb_00007xho

Structure of human inner kinetochore CCAN complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
K [auth S]SCOP2B SuperfamilyCore histone-like 8058042 3001387 SCOP2B (2022-06-29)
N [auth X]SCOP2B SuperfamilyCore histone-like 8053222 3001387 SCOP2B (2022-06-29)
F [auth M]SCOP2B SuperfamilyRas-like P-loop GTPases 8092489 3002022 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
G [auth N]YqgFe7xhoN01 A: alpha bundlesX: Rossmann-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: YqgFECOD (develop294)
K [auth S]PAS_11e7xhoS1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: PAS_11ECOD (develop294)
L [auth T]PAS_11e7xhoT1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: PAS_11ECOD (develop294)
N [auth X]PAS_11e7xhoX1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: PAS_11ECOD (develop294)
F [auth M]PAS_11e7xhoM1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: PAS_11ECOD (develop294)
M [auth W]PAS_11e7xhoW1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: PAS_11ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth H]PF05837Centromere protein H (CENP-H) (CENP-H)Centromere protein H (CENP-H)This family consists of several eukaryotic centromere protein H (CENP-H) sequences. Macromolecular centromere-kinetochore complex plays a critical role in sister chromatid separation, but its complete protein composition as well as its precise dynami ...This family consists of several eukaryotic centromere protein H (CENP-H) sequences. Macromolecular centromere-kinetochore complex plays a critical role in sister chromatid separation, but its complete protein composition as well as its precise dynamic function during mitosis has not yet been clearly determined. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle. CENP-H may play a role in kinetochore organisation and function throughout the cell cycle [1]. This the C-terminus of the region, which is conserved from fungi to humans.
Domain
G [auth N]PF05238Kinetochore protein CHL4 like (CENP-N)Kinetochore protein CHL4 like- Family
H [auth O]PF09496Cenp-O kinetochore centromere component (CENP-O)Cenp-O kinetochore centromere component- Family
J [auth Q]PF13094CENP-Q, a CENPA-CAD centromere complex subunit (CENP-Q)CENP-Q, a CENPA-CAD centromere complex subunit- Family
K [auth S]PF15630CENP-S protein (CENP-S)CENP-S proteinCENP-S is a family of vertebral and fungal kinetochore component proteins. CENP-S complexes with CENP-X to form a stable CENP-T-W-S-X heterotetramer. Domain
N [auth X]PF09415CENP-S associating Centromere protein X (CENP-X)CENP-S associating Centromere protein XThe centromere, essential for faithful chromosome segregation during mitosis, has a network of constitutive centromere-associated (CCAN) proteins associating with it during mitosis. So far in vertebrates at least 15 centromere proteins have been iden ...The centromere, essential for faithful chromosome segregation during mitosis, has a network of constitutive centromere-associated (CCAN) proteins associating with it during mitosis. So far in vertebrates at least 15 centromere proteins have been identified, which are divided into several subclasses based on functional and biochemical analyses. These provide a platform for the formation of a functional kinetochore during mitosis. CENP-S is one that does not associate with the CENP-H-containing complex but rather interacts with CENP-X to form a stable assembly of outer kinetochore proteins that functions downstream of other components of the CCAN. This complex may directly allow efficient and stable formation of the outer kinetochore on the CCAN platform.
Domain
I [auth P]PF13096CENP-A-nucleosome distal (CAD) centromere subunit, CENP-P (CENP-P)CENP-A-nucleosome distal (CAD) centromere subunit, CENP-P- Family
E [auth L]PF13092Centromere protein L (CENP-L)Centromere protein L- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth H]Centromere protein H
C [auth I]Centromere protein I-
G [auth N]Centromere protein N-
H [auth O]Centromere protein O-
J [auth Q]Centromere protein Q-
K [auth S]Centromere protein S
L [auth T]Centromere protein T
N [auth X]Centromere protein X
Q [auth U]Centromere protein U-
I [auth P]Centromere protein P-
F [auth M]Centromere protein M-
E [auth L]Centromere protein L-
D [auth K]Centromere protein K-
P [auth R]Centromere protein R-
M [auth W]CENP-W
A [auth C],
O [auth c]
Centromere protein C

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth H]IPR008426Centromere protein H, C-terminalDomain
B [auth H]IPR040034Centromere protein HFamily
C [auth I]IPR012485Centromere protein IFamily
G [auth N]IPR052011Centromere-associated NAC/CAD complex proteinFamily
G [auth N]IPR007902Centromere protein Chl4/mis15/CENP-NFamily
H [auth O]IPR018464Centromere protein OFamily
J [auth Q]IPR025212Centromere protein QFamily
K [auth S]IPR009072Histone-foldHomologous Superfamily
K [auth S]IPR029003CENP-S/Mhf1Family
L [auth T]IPR009072Histone-foldHomologous Superfamily
L [auth T]IPR032373Centromere kinetochore component CENP-T, N-terminal domainDomain
L [auth T]IPR028255Centromere protein TFamily
L [auth T]IPR035425CENP-T/Histone H4, histone foldDomain
N [auth X]IPR018552Centromere protein XFamily
Q [auth U]IPR025214Centromere protein UFamily
I [auth P]IPR027801Centromere protein PFamily
F [auth M]IPR020987Centromere protein Cenp-MFamily
F [auth M]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth L]IPR025204Centromere subunit LFamily
D [auth K]IPR020993Centromere protein Cenp-KFamily
P [auth R]IPR009601Centromere protein RFamily
M [auth W]IPR028847Centromere protein WFamily
M [auth W]IPR009072Histone-foldHomologous Superfamily
M [auth W]IPR052484Centromere Protein W/WIP1Family
A [auth C],
O [auth c]
IPR028052Kinetochore assembly subunit CENP-C, N-terminal domainDomain
A [auth C],
O [auth c]
IPR025974Mif2/CENP-C cupin domainDomain
A [auth C],
O [auth c]
IPR028386Centromere protein C/Mif2/cnp3Family
A [auth C],
O [auth c]
IPR028931CENP-C, middle DNMT3B-binding domainDomain
A [auth C],
O [auth c]
IPR014710RmlC-like jelly roll foldHomologous Superfamily
A [auth C],
O [auth c]
IPR011051RmlC-like cupin domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B [auth H]PharosQ9H3R5
C [auth I]PharosQ92674
G [auth N]PharosQ96H22
H [auth O]PharosQ9BU64
J [auth Q]PharosQ7L2Z9
K [auth S]PharosQ8N2Z9
L [auth T]PharosQ96BT3
N [auth X]PharosA8MT69
Q [auth U]PharosQ71F23
I [auth P]PharosQ6IPU0
F [auth M]PharosQ9NSP4
E [auth L]PharosQ8N0S6
D [auth K]PharosQ9BS16
P [auth R]PharosQ13352
M [auth W]PharosQ5EE01
A [auth C],
O [auth c]
PharosQ03188