Annotations: 7X6V

lymphocytic choriomeningitis virus polymerase- Matrix Z Protein Complex (LCMV L-Z Complex)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth A]	SCOP2B Superfamily	Restriction endonuclease-like	8103664	3000104	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	Cation_efflux	e7x6vB1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cation_efflux	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth A]	PF17296	Arenavirus cap snatching domain (ArenaCapSnatch)	Arenavirus cap snatching domain	This domain represents the N-terminal domain of the Arenavirus polymerase that is involved in cap snatching during transcription initiation.	Domain
B [auth A]	PF06317	RNA-directed RNA polymerase L, RdRp region (Arena_RNA_pol)	RNA-directed RNA polymerase L, RdRp region	This entry consists of RNA-directed RNA polymerase L (RdRpL) from Arenaviruses (EC:2.7.7.48) [1,2], which catalyses both viral transcription and genome replication [1-3]. This entry represents the central RdRp region, also described as PB1-like. This ...	This entry consists of RNA-directed RNA polymerase L (RdRpL) from Arenaviruses (EC:2.7.7.48) [1,2], which catalyses both viral transcription and genome replication [1-3]. This entry represents the central RdRp region, also described as PB1-like. This domain is the core and is sandwiched by the PA-like region (consisting of the endonuclease (Pfam:PF17296) and PA-C-like domains) where the PA-C-like region tightly binds to the thumb domain of RdRp and the endonuclease forms an appendage domain on the other side [2-4].	Domain
A [auth B]	PF03854	P-11 zinc finger (zf-P11)	P-11 zinc finger	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth A]	RNA-directed RNA polymerase L	RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups hydrolase activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups hydrolase activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding cation binding ion binding metal ion binding	viral gene expression cap snatching negative stranded viral RNA transcription viral process viral transcription RNA-templated viral transcription RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process viral gene expression cap snatching negative stranded viral RNA transcription viral process viral transcription RNA-templated viral transcription RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process negative stranded viral RNA replication viral genome replication biosynthetic process viral RNA genome replication metabolic process cellular process macromolecule metabolic process	host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part
A [auth B]	RING finger protein Z	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding RNA binding nucleic acid binding	virion assembly viral process viral budding viral budding via host ESCRT complex viral life cycle biological process involved in interspecies interaction between organisms non-lytic viral release biological process involved in interaction with host biological process involved in symbiotic interaction exit from host cell viral budding from plasma membrane viral release from host cell	virion component cellular anatomical structure membrane host cell plasma membrane host cellular component host cell part host cell membrane other organism part host intracellular part host cell perinuclear region of cytoplasm host cell cytoplasm host intracellular region host cell cytoplasm part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth A]	IPR007099	RNA-directed RNA polymerase, negative-strand RNA virus	Domain
B [auth A]	IPR026382	RNA endonuclease, cap-snatching, arenaviral	Domain
B [auth A]	IPR048006	RNA endonuclease, cap-snatching, bunyaviral	Domain
B [auth A]	IPR010453	RNA polymerase, arenaviral	Family
A [auth B]	IPR038485	Protein Z, RING-type zinc finger superfamily	Homologous Superfamily
A [auth B]	IPR024183	RING finger protein Z, arenaviridae	Family
A [auth B]	IPR003224	RING finger protein Z, zinc finger	Domain