7X3K | pdb_00007x3k

Cryo-EM structure of RAC in the State C2 RNC-RAC complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B7tm_1e7x3kB1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: 7tm_1ECOD (v294.1)
ADnaJe7x3kA01 A: a/b three-layered sandwichesX: Rossmann-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: DnaJECOD (v294.1)
ARx_Ne7x3kA02 A: a/b three-layered sandwichesX: Rossmann-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rx_NECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00012Hsp70 protein (HSP70)Hsp70 protein- Family
PF00226DnaJ domain (DnaJ)DnaJ domainDnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are conf ...DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature [2].
Domain
PF21884Zuotin-like, zuotin homology domain (ZUO1-like_ZHD)Zuotin-like, zuotin homology domainThis domain is found in Zuotin from Saccharomyces cerevisiae (ZUO1) and in similar eukaryotic sequences. ZUO1 is a component of the ribosome-associated complex (RAC), a heterodimeric chaperone complex involved in regulation of accurate translation te ...This domain is found in Zuotin from Saccharomyces cerevisiae (ZUO1) and in similar eukaryotic sequences. ZUO1 is a component of the ribosome-associated complex (RAC), a heterodimeric chaperone complex involved in regulation of accurate translation termination and in folding or maintaining nascent polypeptides in a folding-competent state. This entry represents its zuotin homology domain (ZHD), which is functionally important for association with ribosomes. It folds into four helices, including a three helix bundle [1]. It is normally found C-terminal to Pfam:PF00226.
Domain
PF26185Zuotin N-terminal domain (Zuotin_N)Zuotin N-terminal domainThis entry represents the N-terminal domain in Zuotin, found in fungi. Zuotin is a component of the ribosome-associated complex (RAC), which is a heterodimer of the Hsp70/DnaK-type chaperone SSZ1 and the Hsp40/DnaJ-type chaperone ZUO1. The RAC chaper ...This entry represents the N-terminal domain in Zuotin, found in fungi. Zuotin is a component of the ribosome-associated complex (RAC), which is a heterodimer of the Hsp70/DnaK-type chaperone SSZ1 and the Hsp40/DnaJ-type chaperone ZUO1. The RAC chaperone complex plays a role in regulating accurate translation termination and in folding or maintaining nascent polypeptides in a folding-competent state. The ATPase activity of the ribosome-associated pool of Hsp70-type chaperones SSB1/SSB2, which bind to the nascent polypeptide chain, is stimulated by the RAC chaperone complex. Zuotin acts as a J-protein for SSB1/SSB2 only when it is associated with SSZ1. This domain is responsible for Zuotin's interaction with SSZ1. It contains a conserved LP-motif that binds to the SSZ1 C-terminal SBD beta-lid domain in the same way as canonical Hsp70s bind to their substrates [1-2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Ribosome-associated complex subunit SSZ1
Zuotin