7X39 | pdb_00007x39

Structure of CIZ1 bound ERH

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	ERH-like	8043142	3000225	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ERH-like	8043142	3000225	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ERH-like	8043142	3000225	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ERH-like	8043142	3000225	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	7tm_1	e7x39D1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: 7tm_1	ECOD (v294.1)
C	7tm_1	e7x39C1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: 7tm_1	ECOD (v294.1)
B	7tm_1	e7x39B1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: 7tm_1	ECOD (v294.1)
A	V-set	e7x39A1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: V-set	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01133	Enhancer of rudimentary (ER)	Enhancer of rudimentary	Enhancer of rudimentary is a protein of unknown function that is highly conserved in plants and animals. This protein is found to be an enhancer of the rudimentary gene Swiss:P05990.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Enhancer of rudimentary homolog,Cip1-interacting zinc finger protein	sequence-specific DNA binding DNA binding binding nucleoside phosphate binding nucleotide binding nucleic acid binding heterocyclic compound binding methyl-CpG binding small molecule binding RNA binding protein binding cyclin binding cation binding transition metal ion binding sequence-specific DNA binding DNA binding binding nucleoside phosphate binding nucleotide binding nucleic acid binding heterocyclic compound binding methyl-CpG binding small molecule binding RNA binding protein binding cyclin binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding	nucleobase-containing compound metabolic process primary metabolic process metabolic process cellular process pyrimidine-containing compound metabolic process nucleobase-containing small molecule metabolic process carbohydrate derivative metabolic process small molecule metabolic process pyrimidine nucleoside metabolic process nucleoside metabolic process maintenance of protein location cellular localization maintenance of protein location in nucleus protein localization to nucleus nucleobase-containing compound metabolic process primary metabolic process metabolic process cellular process pyrimidine-containing compound metabolic process nucleobase-containing small molecule metabolic process carbohydrate derivative metabolic process small molecule metabolic process pyrimidine nucleoside metabolic process nucleoside metabolic process maintenance of protein location cellular localization maintenance of protein location in nucleus protein localization to nucleus maintenance of location maintenance of location in cell localization maintenance of protein location in cell macromolecule localization protein localization to organelle maintenance of protein localization in organelle intracellular protein localization regulation of DNA-templated DNA replication initiation regulation of cellular process positive regulation of DNA replication positive regulation of biological process regulation of primary metabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process DNA-templated DNA replication regulation of biological process DNA replication initiation biological regulation DNA metabolic process regulation of macromolecule metabolic process nucleic acid metabolic process DNA replication positive regulation of DNA metabolic process regulation of DNA-templated DNA replication positive regulation of DNA-templated DNA replication macromolecule metabolic process regulation of metabolic process positive regulation of DNA-templated DNA replication initiation regulation of DNA replication regulation of DNA metabolic process negative regulation of biological process cellular component organization cellular component biogenesis cellular component assembly chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of biosynthetic process random inactivation of X chromosome heterochromatin formation sex-chromosome dosage compensation epigenetic regulation of gene expression negative regulation of metabolic process heterochromatin organization gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process dosage compensation by inactivation of X chromosome regulation of macromolecule biosynthetic process negative regulation of gene expression, epigenetic	midbody cellular anatomical structure protein-containing complex intracellular anatomical structure catalytic complex methylosome methyltransferase complex cytoplasm transferase complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle midbody cellular anatomical structure protein-containing complex intracellular anatomical structure catalytic complex methylosome methyltransferase complex cytoplasm transferase complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle cell periphery plasma membrane membrane membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR035912	Enhancer of rudimentary superfamily	Homologous Superfamily
A, B, C, D	IPR000781	Enhancer of rudimentary	Family
A, B, C, D	IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	Domain
A, B, C, D	IPR013087	Zinc finger C2H2-type	Domain
A, B, C, D	IPR036236	Zinc finger C2H2 superfamily	Homologous Superfamily
A, B, C, D	IPR026811	Cip1-interacting zinc finger protein	Family
A, B, C, D	IPR056345	CIZ1, C2H2-type zinc finger	Domain
A, B, C, D	IPR000690	Matrin/U1-C, C2H2-type zinc finger	Domain
A, B, C, D	IPR022755	Zinc finger, double-stranded RNA binding	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q9ULV3	diabetes mellitus osteosarcoma lymphoplasmacytic lymphoma pancreatic ductal adenocarcinoma MALT lymphoma plasma cell myeloma dystonic disorder Ewing sarcoma prostate cancer torsion dystonia 7 atypical teratoid rhabdoid tumor developmental and epileptic encephalopathy, 31 DYSTONIA 7, TORSION (disorder) glioblastoma medulloblastoma diabetes mellitus osteosarcoma lymphoplasmacytic lymphoma pancreatic ductal adenocarcinoma MALT lymphoma plasma cell myeloma dystonic disorder Ewing sarcoma prostate cancer torsion dystonia 7 atypical teratoid rhabdoid tumor developmental and epileptic encephalopathy, 31 DYSTONIA 7, TORSION (disorder) glioblastoma medulloblastoma large cell medulloblastoma osteosarcoma psoriasis cutaneous lupus erythematosus dystonia 23 lung cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.