7WPS | pdb_00007wps

Cryo-EM structure of VWF D'D3 dimer complexed with D1D2 at 4.3 angstron resolution (7 units)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Z [auth T]SCOP2B Superfamilyvon Willebrand factor type D domain-like 8107359 3002872 SCOP2B (2022-06-29)
Y [auth R]SCOP2B Superfamilyvon Willebrand factor type D domain-like 8107359 3002872 SCOP2B (2022-06-29)
X [auth P]SCOP2B Superfamilyvon Willebrand factor type D domain-like 8107359 3002872 SCOP2B (2022-06-29)
W [auth N]SCOP2B Superfamilyvon Willebrand factor type D domain-like 8107359 3002872 SCOP2B (2022-06-29)
V [auth L]SCOP2B Superfamilyvon Willebrand factor type D domain-like 8107359 3002872 SCOP2B (2022-06-29)
U [auth J]SCOP2B Superfamilyvon Willebrand factor type D domain-like 8107359 3002872 SCOP2B (2022-06-29)
T [auth H]SCOP2B Superfamilyvon Willebrand factor type D domain-like 8107359 3002872 SCOP2B (2022-06-29)
S [auth F]SCOP2B Superfamilyvon Willebrand factor type D domain-like 8107359 3002872 SCOP2B (2022-06-29)
R [auth D]SCOP2B Superfamilyvon Willebrand factor type D domain-like 8107359 3002872 SCOP2B (2022-06-29)
Q [auth C]SCOP2B Superfamilyvon Willebrand factor type D domain-like 8107359 3002872 SCOP2B (2022-06-29)
D [auth b]SCOP2B Superfamilyvon Willebrand factor type D domain-like 8107359 3002872 SCOP2B (2022-06-29)
BA [auth X]SCOP2B Superfamilyvon Willebrand factor type D domain-like 8107359 3002872 SCOP2B (2022-06-29)
B [auth Z]SCOP2B Superfamilyvon Willebrand factor type D domain-like 8107359 3002872 SCOP2B (2022-06-29)
AA [auth V]SCOP2B Superfamilyvon Willebrand factor type D domain-like 8107359 3002872 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Z [auth T]PhnJe7wpsT1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
Y [auth R]PhnJe7wpsR1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
X [auth P]PhnJe7wpsP1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
W [auth N]PhnJe7wpsN1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
V [auth L]PhnJe7wpsL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
U [auth J]PhnJe7wpsJ1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
T [auth H]PhnJe7wpsH1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
S [auth F]PhnJe7wpsF1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
R [auth D]PhnJe7wpsD1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
Q [auth C]PhnJe7wpsC1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
D [auth b]PhnJe7wpsb1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
BA [auth X]PhnJe7wpsX1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
B [auth Z]PhnJe7wpsZ1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
AA [auth V]PhnJe7wpsV1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
P [auth a]PhnJe7wpsa1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
O [auth Y]PhnJe7wpsY1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
N [auth W]PhnJe7wpsW1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
M [auth U]PhnJe7wpsU1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
L [auth S]PhnJe7wpsS1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
K [auth Q]PhnJe7wpsQ1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
J [auth O]PhnJe7wpsO1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
I [auth M]PhnJe7wpsM1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
H [auth K]PhnJe7wpsK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
G [auth I]PhnJe7wpsI1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
F [auth G]PhnJe7wpsG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
EPhnJe7wpsE1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
C [auth B]PhnJe7wpsB1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)
APhnJe7wpsA1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF08742C8 domain (C8)C8 domainThis domain contains 8 conserved cysteine residues, but this family only contains 7 of them to overlaps with other domains. It is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin. It is often fo ...This domain contains 8 conserved cysteine residues, but this family only contains 7 of them to overlaps with other domains. It is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin. It is often found on proteins containing Pfam:PF00094 and Pfam:PF01826.
Domain
PF25962Otogelin-like/Mucin TIL domain (TIL_OTOGL_Mucin)Otogelin-like/Mucin TIL domainThis entry describes a trypsin inhibitor-like (TIL) cysteine rich domain found in Otogelin, Otogelin-like proteins and Mucin proteins from eukaryotes. Otogelin is a structurally complex glycoprotein with specialised roles in the inner ear membranes. ...This entry describes a trypsin inhibitor-like (TIL) cysteine rich domain found in Otogelin, Otogelin-like proteins and Mucin proteins from eukaryotes. Otogelin is a structurally complex glycoprotein with specialised roles in the inner ear membranes. While it shares some structural similarities with mucins, including von Willebrand factor-like domains and cysteine-rich regions, it differs in its glycosylation patterns and functions. Otogelin undergoes primarily N-glycosylation and plays a critical role in the organisation of the extracellular matrix within the inner ear. In contrast, mucins like MUC5B and MUC19 are heavily O-glycosylated, gel-forming proteins that provide lubrication and protective barriers on mucosal epithelial surfaces [1-5]. The TIL domain is characterised by the presence of five disulfide bonds (two of which are located on either side of the reactive site) in a single small protein domain of 61-62 residues [6].
Domain
PF00094von Willebrand factor type D domain (VWD)von Willebrand factor type D domainSwiss:P17554 contains a vwd domain. Its function is unrelated but the similarity is very strong by several methods. This domain is structurally homologous to the C-terminal domain of repulsive guidance molecules (RGM) despite low sequence identity [2 ...Swiss:P17554 contains a vwd domain. Its function is unrelated but the similarity is very strong by several methods. This domain is structurally homologous to the C-terminal domain of repulsive guidance molecules (RGM) despite low sequence identity [2].
Domain
PF23244Von Willebrand factor-like domain (VWF)Von Willebrand factor-like domainThis domain is found in human von Willebrand factor (vWF) and similar proteins mainly found in animals. vWF is important in the maintenance of hemostasis and acts as a chaperone for coagulation factor VIII, delivering it to the site of injury. This d ...This domain is found in human von Willebrand factor (vWF) and similar proteins mainly found in animals. vWF is important in the maintenance of hemostasis and acts as a chaperone for coagulation factor VIII, delivering it to the site of injury. This domain adopts an all-beta structure [1]. It is often found associated to Pfam:PF00094.
Domain
PF16164VWA N-terminal (VWA_N2)VWA N-terminal- Family
PF08742C8 domain (C8)C8 domainThis domain contains 8 conserved cysteine residues, but this family only contains 7 of them to overlaps with other domains. It is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin. It is often fo ...This domain contains 8 conserved cysteine residues, but this family only contains 7 of them to overlaps with other domains. It is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin. It is often found on proteins containing Pfam:PF00094 and Pfam:PF01826.
Domain
PF01826Trypsin Inhibitor like cysteine rich domain (TIL)Trypsin Inhibitor like cysteine rich domainThis family contains trypsin inhibitors as well as a domain found in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, ...This family contains trypsin inhibitors as well as a domain found in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9.
Domain
PF00094von Willebrand factor type D domain (VWD)von Willebrand factor type D domainSwiss:P17554 contains a vwd domain. Its function is unrelated but the similarity is very strong by several methods. This domain is structurally homologous to the C-terminal domain of repulsive guidance molecules (RGM) despite low sequence identity [2 ...Swiss:P17554 contains a vwd domain. Its function is unrelated but the similarity is very strong by several methods. This domain is structurally homologous to the C-terminal domain of repulsive guidance molecules (RGM) despite low sequence identity [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
von Willebrand factor
von Willebrand antigen 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR050780Mucin/von Willebrand/Thrombospondin superfamilyFamily
IPR002919Trypsin Inhibitor-like, cysteine rich domainDomain
IPR001007VWFC domainDomain
IPR037578Von Willebrand factorFamily
IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
IPR001846von Willebrand factor, type D domainDomain
IPR014853VWF/SSPO/Zonadhesin-like, cysteine-rich domainDomain
IPR032361von Willebrand factor, VWA N-terminal domainDomain
IPR036084Serine protease inhibitor-like superfamilyHomologous Superfamily
IPR058753Otogelin-like/Mucin, TIL domainDomain
IPR002035von Willebrand factor, type ADomain
IPR006207Cystine knot, C-terminalDomain
IPR050780Mucin/von Willebrand/Thrombospondin superfamilyFamily
IPR002919Trypsin Inhibitor-like, cysteine rich domainDomain
IPR001007VWFC domainDomain
IPR037578Von Willebrand factorFamily
IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
IPR001846von Willebrand factor, type D domainDomain
IPR014853VWF/SSPO/Zonadhesin-like, cysteine-rich domainDomain
IPR032361von Willebrand factor, VWA N-terminal domainDomain
IPR036084Serine protease inhibitor-like superfamilyHomologous Superfamily
IPR058753Otogelin-like/Mucin, TIL domainDomain
IPR002035von Willebrand factor, type ADomain
IPR006207Cystine knot, C-terminalDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP04275
PharosP04275