7WHV | pdb_00007whv

Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in detergent with beryllium fluoride (E2P state)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PK_C	e7whvA1	A: alpha bundles	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PK_C	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF16209	Phospholipid-translocating ATPase N-terminal (PhoLip_ATPase_N)	Phospholipid-translocating ATPase N-terminal	-	Family
A	PF16212	Phospholipid-translocating P-type ATPase C-terminal (PhoLip_ATPase_C)	Phospholipid-translocating P-type ATPase C-terminal	-	Family
A	PF13246	P-type ATPase, cytoplasmic domain N (Cation_ATPase)	P-type ATPase, cytoplasmic domain N	-	Family
B	PF03381	LEM3 (ligand-effect modulator 3) family / CDC50 family (CDC50)	LEM3 (ligand-effect modulator 3) family / CDC50 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Phospholipid-transporting ATPase DNF1	ATPase-coupled intramembrane lipid transporter activity lipid transporter activity sphingolipid transporter activity flippase activity intramembrane lipid transporter activity transporter activity glycosylceramide flippase activity ATP-dependent activity phosphatidylcholine transporter activity phosphatidylcholine floppase activity floppase activity phospholipid transporter activity glycerophospholipid flippase activity phosphatidylserine flippase activity ATPase-coupled intramembrane lipid transporter activity lipid transporter activity sphingolipid transporter activity flippase activity intramembrane lipid transporter activity transporter activity glycosylceramide flippase activity ATP-dependent activity phosphatidylcholine transporter activity phosphatidylcholine floppase activity floppase activity phospholipid transporter activity glycerophospholipid flippase activity phosphatidylserine flippase activity aminophospholipid flippase activity phosphatidylcholine flippase activity cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding phosphatidylethanolamine flippase activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding phosphatidylserine floppase activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity identical protein binding protein binding	localization import into cell transport cellular process endocytosis establishment of localization vesicle-mediated transport membrane organization ceramide translocation nitrogen compound transport sphingolipid translocation biological regulation lipid localization lipid transport localization import into cell transport cellular process endocytosis establishment of localization vesicle-mediated transport membrane organization ceramide translocation nitrogen compound transport sphingolipid translocation biological regulation lipid localization lipid transport lipid translocation regulation of membrane lipid distribution cellular component organization ceramide transport macromolecule localization cellular component organization or biogenesis regulation of biological quality cellular localization establishment of protein localization intracellular transport protein transport establishment of localization in cell intracellular protein localization intracellular protein transport establishment or maintenance of cell polarity phospholipid translocation phospholipid transport organophosphate ester transport	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cell septum cell periphery plasma membrane membrane phospholipid-translocating ATPase complex protein-containing complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cell septum cell periphery plasma membrane membrane phospholipid-translocating ATPase complex protein-containing complex transporter complex mating projection tip plasma membrane of cell tip plasma membrane bounded cell projection cell projection mating projection cell tip plasma membrane region cell pole mating projection tip membrane site of polarized growth Golgi apparatus endomembrane system endosome membrane endosome intracellular vesicle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle vesicle organelle membrane cellular bud neck cellular bud endoplasmic reticulum
B	Alkylphosphocholine resistance protein LEM3	-	cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cellular process signal transduction cell communication membrane organization nitrogen compound transport phospholipid translocation transport cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cellular process signal transduction cell communication membrane organization nitrogen compound transport phospholipid translocation transport lipid localization phospholipid transport lipid transport lipid translocation establishment of localization regulation of membrane lipid distribution cellular component organization localization aminophospholipid translocation macromolecule localization aminophospholipid transport cellular component organization or biogenesis regulation of biological quality organophosphate ester transport regulation of cellular component organization vacuole organization regulation of vacuole organization regulation of organelle organization organelle organization	cell periphery cellular anatomical structure plasma membrane membrane phospholipid-translocating ATPase complex protein-containing complex transporter complex membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle cell periphery cellular anatomical structure plasma membrane membrane phospholipid-translocating ATPase complex protein-containing complex transporter complex membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001757	P-type ATPase	Family
A	IPR044492	P-type ATPase, haloacid dehalogenase domain	Domain
A	IPR006539	P-type ATPase, subfamily IV	Family
A	IPR018303	P-type ATPase, phosphorylation site	PTM
A	IPR023298	P-type ATPase, transmembrane domain superfamily	Homologous Superfamily
A	IPR032631	P-type ATPase, N-terminal	Domain
A	IPR023214	HAD superfamily	Homologous Superfamily
A	IPR008250	P-type ATPase, A domain superfamily	Homologous Superfamily
A	IPR036412	HAD-like superfamily	Homologous Superfamily
A	IPR032630	P-type ATPase, C-terminal	Domain
A	IPR023299	P-type ATPase, cytoplasmic domain N	Homologous Superfamily
B	IPR005045	CDC50/LEM3 family	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B	OPM	Transmembrane	Alpha-helical polytopic	P-type ATPase (P-ATPase)	Phospholipid-translocating ATPase

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B	MemProtMD	Annotated as membrane protein by MemProtMD

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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