7WFD | pdb_00007wfd

Left PSI in the cyclic electron transport supercomplex NDH-PSI from Arabidopsis


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth AI]SCOP2B SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8106958 3000819 SCOP2B (2022-06-29)
H [auth AH]SCOP2 FamilyPhotosystem I reaction centre subunit VI 8107009 4007266 SCOP2 (2022-06-29)
H [auth AH]SCOP2 SuperfamilyPhotosystem I reaction centre subunit VI 8107010 3002733 SCOP2 (2022-06-29)
F [auth AF]SCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8107006 3000813 SCOP2B (2022-06-29)
E [auth AE]SCOP2B SuperfamilyElectron transport accessory proteins 8074494 3000325 SCOP2B (2022-06-29)
D [auth AD]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8107004 3000951 SCOP2B (2022-06-29)
C [auth AC]SCOP2B Superfamily4Fe-4S ferredoxins 8106962 3000020 SCOP2B (2022-06-29)
B [auth AB]SCOP2 FamilyPhotosystem I subunits PsaA/PsaB 8106955 4002118 SCOP2 (2022-06-29)
B [auth AB]SCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB 8106956 3000850 SCOP2 (2022-06-29)
P [auth A6]SCOP2B SuperfamilyChlorophyll a-b binding protein 8106984 3000343 SCOP2B (2022-06-29)
O [auth A4]SCOP2B SuperfamilyChlorophyll a-b binding protein 8106944 3000343 SCOP2B (2022-06-29)
N [auth A3]SCOP2B SuperfamilyChlorophyll a-b binding protein 8107012 3000343 SCOP2B (2022-06-29)
M [auth A1]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076986 3000343 SCOP2B (2022-06-29)
L [auth AL]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8107008 3000870 SCOP2B (2022-06-29)
J [auth AJ]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8106960 3000824 SCOP2B (2022-06-29)
A [auth AA]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8106954 3000850 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth AI]PK_Ce7wfdAI1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PK_CECOD (develop294)
H [auth AH]PK_Ce7wfdAH1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PK_CECOD (develop294)
G [auth AG]PhnJe7wfdAG1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (develop294)
F [auth AF]PhnJe7wfdAF1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (develop294)
E [auth AE]PhnJe7wfdAE1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (develop294)
D [auth AD]PhnJe7wfdAD1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (develop294)
C [auth AC]PK_Ce7wfdAC1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PK_CECOD (develop294)
B [auth AB]PK_Ce7wfdAB1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PK_CECOD (develop294)
P [auth A6]PK_Ce7wfdA61 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PK_CECOD (develop294)
O [auth A4]PK_Ce7wfdA41 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PK_CECOD (develop294)
N [auth A3]PhnJe7wfdA31 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (develop294)
M [auth A1]PK_Ce7wfdA11 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PK_CECOD (develop294)
L [auth AL]PhnJe7wfdAL1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (develop294)
K [auth AK]PK_Ce7wfdAK1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PK_CECOD (develop294)
J [auth AJ]PhnJe7wfdAJ1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PhnJECOD (develop294)
A [auth AA]PK_Ce7wfdAA1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PK_CECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth AI]PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
G [auth AG]PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
E [auth AE]PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. Domain
D [auth AD]PF02531PsaD (PsaD)PsaD- Family
C [auth AC]PF146974Fe-4S dicluster domain (Fer4_21)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
B [auth AB]PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
P [auth A6]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
O [auth A4]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
N [auth A3]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
M [auth A1]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
L [auth AL]PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
K [auth AK]PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
J [auth AJ]PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
A [auth AA]PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth AI]Photosystem I reaction center subunit VIII-
H [auth AH]Photosystem I reaction center subunit VI-2, chloroplastic-
G [auth AG]Photosystem I reaction center subunit V, chloroplastic-
F [auth AF]Photosystem I reaction center subunit III, chloroplastic
E [auth AE]Photosystem I reaction center subunit IV A, chloroplastic
D [auth AD]Photosystem I reaction center subunit II-2, chloroplastic
C [auth AC]Photosystem I iron-sulfur center
B [auth AB]Photosystem I P700 chlorophyll a apoprotein A2
P [auth A6]Photosystem I chlorophyll a/b-binding protein 6, chloroplastic
O [auth A4]Chlorophyll a-b binding protein 4, chloroplastic
N [auth A3]Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic
M [auth A1]Chlorophyll a-b binding protein 6, chloroplastic
L [auth AL]Photosystem I reaction center subunit XI, chloroplastic
K [auth AK]Photosystem I reaction center subunit psaK, chloroplastic-
J [auth AJ]Photosystem I reaction center subunit IX-
A [auth AA]Photosystem I P700 chlorophyll a apoprotein A1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth AI]IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
I [auth AI]IPR001302Photosystem I reaction centre subunit VIIIFamily
H [auth AH]IPR004928Photosystem I PsaH, reaction centre subunit VIFamily
G [auth AG]IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
G [auth AG]IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
G [auth AG]IPR000549Photosystem I reaction center subunit V/PsaKFamily
G [auth AG]IPR017494Photosystem I reaction center subunit VFamily
F [auth AF]IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
F [auth AF]IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
E [auth AE]IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
E [auth AE]IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
D [auth AD]IPR003685Photosystem I PsaDFamily
D [auth AD]IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
C [auth AC]IPR017491Photosystem I protein PsaCFamily
C [auth AC]IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
C [auth AC]IPR050157Photosystem I iron-sulfur centerFamily
C [auth AC]IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
B [auth AB]IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
B [auth AB]IPR001280Photosystem I PsaA/PsaBFamily
B [auth AB]IPR006244Photosystem I PsaBFamily
B [auth AB]IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
P [auth A6]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
P [auth A6]IPR022796Chlorophyll A-B binding proteinFamily
O [auth A4]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
O [auth A4]IPR022796Chlorophyll A-B binding proteinFamily
N [auth A3]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
N [auth A3]IPR022796Chlorophyll A-B binding proteinFamily
M [auth A1]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
M [auth A1]IPR022796Chlorophyll A-B binding proteinFamily
L [auth AL]IPR022980Photosystem I, reaction centre subunit XIFamily
L [auth AL]IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
L [auth AL]IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
K [auth AK]IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
K [auth AK]IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
K [auth AK]IPR000549Photosystem I reaction center subunit V/PsaKFamily
K [auth AK]IPR035982Photosystem I reaction centre subunit PsaK superfamilyHomologous Superfamily
K [auth AK]IPR017493Photosystem I reaction center subunit psaK, plantFamily
J [auth AJ]IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
J [auth AJ]IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
A [auth AA]IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
A [auth AA]IPR001280Photosystem I PsaA/PsaBFamily
A [auth AA]IPR006243Photosystem I PsaAFamily
A [auth AA]IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site