Annotations: 7WA4

Crystal structure of GIGANTEA in complex with LKP2

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	Flavin-binding PAS domain	8107313	4003660	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	PYP-like sensor domain (PAS domain)	8107314	3000471	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PhnJ	e7wa4B1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PhnJ	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF13426	PAS domain (PAS_9)	PAS domain	This domain is found in many signalling proteins in which it functions as a sensor domain. It recognises FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Adagio protein 2	-	catabolic process primary metabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process protein ubiquitination macromolecule modification post-translational protein modification catabolic process primary metabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal rhythmic process regulation of biological process circadian rhythm biological regulation regulation of circadian rhythm	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle Cajal body nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle Cajal body nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen ribonucleoprotein granule intracellular organelle nuclear body nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen
A	Protein GIGANTEA	DNA binding binding nucleic acid binding	response to light stimulus response to stimulus response to radiation response to abiotic stimulus response to blue light rhythmic process circadian rhythm regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription response to light stimulus response to stimulus response to radiation response to abiotic stimulus response to blue light rhythmic process circadian rhythm regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process photoperiodism, flowering multicellular organismal process regulation of developmental process reproductive process positive regulation of biological process regulation of long-day photoperiodism, flowering developmental process involved in reproduction positive regulation of response to stimulus positive regulation of developmental process multicellular organism development photoperiodism anatomical structure development reproductive structure development regulation of multicellular organismal process post-embryonic development long-day photoperiodism system development developmental process regulation of multicellular organismal development reproductive system development vegetative to reproductive phase transition of meristem regulation of post-embryonic development long-day photoperiodism, flowering regulation of response to stimulus positive regulation of long-day photoperiodism, flowering positive regulation of multicellular organismal process positive regulation of post-embryonic development regulation of photoperiodism, flowering response to stress response to cold response to temperature stimulus regulation of circadian rhythm flower development plant gross anatomical part developmental process reproductive shoot system development shoot system development temperature compensation of the circadian clock response to far red light response to red or far red light response to hydrogen peroxide response to oxidative stress response to chemical response to oxygen-containing compound response to reactive oxygen species	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR035965	PAS domain superfamily	Homologous Superfamily
B	IPR036047	F-box-like domain superfamily	Homologous Superfamily
B	IPR000014	PAS domain	Domain
B	IPR011498	Kelch repeat type 2	Repeat
B	IPR001810	F-box domain	Domain
B	IPR015915	Kelch-type beta-propeller	Homologous Superfamily
A	IPR026211	GIGANTEA	Family
A	IPR063688	GIGANTEA, N-terminal domain	Domain
A	IPR063427	GIGANTEA, middle domain	Domain
A	IPR060515	GIGANTEA, C-terminal domain	Domain