7VY3

STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES LACKING PROTEIN-U

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth L]	PF00124	e7vy3L1	A: alpha bundles	X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)	H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)	T: Bacterial photosystem II reaction centre L and M subunits-like	F: PF00124	ECOD (1.6)
B [auth M]	PF00124	e7vy3M1	A: alpha bundles	X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)	H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)	T: Bacterial photosystem II reaction centre L and M subunits-like	F: PF00124	ECOD (1.6)
C [auth H]	PF03967,PF05239	e7vy3H2	A: beta barrels	X: SH3	H: PRC-barrel domain (From Topology)	T: PRC-barrel domain	F: PF03967,PF05239	ECOD (1.6)
C [auth H]	PF03967	e7vy3H1	A: extended segments	X: Photosystem II reaction centre subunit H, transmembrane region (From Topology)	H: Photosystem II reaction centre subunit H, transmembrane region (From Topology)	T: Photosystem II reaction centre subunit H, transmembrane region	F: PF03967	ECOD (1.6)
H [auth F]	PF00556	e7vy3F1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
J [auth I]	PF00556	e7vy3I1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
P [auth Q]	PF00556	e7vy3Q1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
V [auth Y]	PF00556	e7vy3Y1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
D [auth A]	PF00556	e7vy3A1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
F [auth D]	PF00556	e7vy3D1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
L [auth K]	PF00556	e7vy3K1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
N [auth O]	PF00556	e7vy3O1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
R [auth S]	PF00556	e7vy3S1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
T [auth V]	PF00556	e7vy3V1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
X [auth 1]	PF00556	e7vy311	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
G [auth E]	PF00556	e7vy3E1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
K [auth J]	PF00556	e7vy3J1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
O [auth P]	PF00556	e7vy3P1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
S [auth T]	PF00556	e7vy3T1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
E [auth B]	PF00556	e7vy3B1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
I [auth G]	PF00556	e7vy3G1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
M [auth N]	PF00556	e7vy3N1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
Q [auth R]	PF00556	e7vy3R1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
U [auth W]	PF00556	e7vy3W1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
W [auth Z]	PF00556	e7vy3Z1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: PF00556	ECOD (1.6)
Y [auth X]	PF11511	e7vy3X1	A: extended segments	X: Intrinsic membrane protein pufX (From Topology)	H: Intrinsic membrane protein pufX (From Topology)	T: Intrinsic membrane protein pufX	F: PF11511	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth L]	PF00124	Photosynthetic reaction centre protein (Photo_RC)	Photosynthetic reaction centre protein	-	Family
B [auth M]	PF00124	Photosynthetic reaction centre protein (Photo_RC)	Photosynthetic reaction centre protein	-	Family
C [auth H]	PF03967	Photosynthetic reaction centre, H-chain N-terminal region (PRCH)	Photosynthetic reaction centre, H-chain N-terminal region	-	Family
C [auth H]	PF05239	PRC-barrel domain (PRC)	PRC-barrel domain	The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ...	The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [1].	Domain
D [auth A], F [auth D], H [auth F], J [auth I], L [auth K], D [auth A], F [auth D], H [auth F], J [auth I], L [auth K], N [auth O], P [auth Q], R [auth S], T [auth V], V [auth Y], X [auth 1]	PF00556	Antenna complex alpha/beta subunit (LHC)	Antenna complex alpha/beta subunit	-	Domain
E [auth B], G [auth E], I [auth G], K [auth J], M [auth N], E [auth B], G [auth E], I [auth G], K [auth J], M [auth N], O [auth P], Q [auth R], S [auth T], U [auth W], W [auth Z]	PF00556	Antenna complex alpha/beta subunit (LHC)	Antenna complex alpha/beta subunit	-	Domain
Y [auth X]	PF11511	Intrinsic membrane protein PufX (RhodobacterPufX)	Intrinsic membrane protein PufX	-	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
D [auth A], F [auth D], H [auth F], J [auth I], L [auth K], D [auth A], F [auth D], H [auth F], J [auth I], L [auth K], N [auth O], P [auth Q], R [auth S], T [auth V], V [auth Y], X [auth 1]	FME	Parent Component: MET RESID: AA0021 , AA0566 PSI-MOD : N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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7VY3

STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES LACKING PROTEIN-U

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Protein Modification Annotation