Annotations: 7VRR

Crystal structure of Arabidopsis thaliana HDT1

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	NPL4	e7vrrE1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: NPL4	ECOD (v295.2)
D	NPL4	e7vrrD1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: NPL4	ECOD (v295.2)
C	NPL4	e7vrrC1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: NPL4	ECOD (v295.2)
B	NPL4	e7vrrB1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: NPL4	ECOD (v295.2)
A	zf-NPL4	e7vrrA1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: zf-NPL4	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF17800	Nucleoplasmin-like domain (NPL)	Nucleoplasmin-like domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	Histone deacetylase HDT1	hydrolase activity catalytic activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding deacetylase activity histone deacetylase activity protein lysine deacetylase activity catalytic activity, acting on a protein deacylase activity hydrolase activity catalytic activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding deacetylase activity histone deacetylase activity protein lysine deacetylase activity catalytic activity, acting on a protein deacylase activity histone modifying activity	DNA-mediated transformation horizontal gene transfer cellular process developmental process multicellular organismal process reproductive system development reproductive process multicellular organismal reproductive process plant gross anatomical part developmental process developmental maturation developmental process involved in reproduction seed dormancy process multicellular organism development fruit development DNA-mediated transformation horizontal gene transfer cellular process developmental process multicellular organismal process reproductive system development reproductive process multicellular organismal reproductive process plant gross anatomical part developmental process developmental maturation developmental process involved in reproduction seed dormancy process multicellular organism development fruit development seed development anatomical structure development reproductive structure development post-embryonic development dormancy process seed maturation system development adaxial/abaxial axis specification polarity specification of adaxial/abaxial axis specification of axis polarity pattern specification process adaxial/abaxial pattern specification regionalization axis specification RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process macromolecule metabolic process plant organ development root development root system development	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR041232	Nucleoplasmin-like domain	Domain
A, B, C, D, E	IPR013087	Zinc finger C2H2-type	Domain

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.