7VLY | pdb_00007vly

Cryo-EM structure of Listeria monocytogenes man-PTS complexed with pediocin PA-1

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth Y], D [auth C], G [auth F]	Mannose/fructose/sorbose family PTS transporter subunit IIC	-	import into cell phosphoenolpyruvate-dependent sugar phosphotransferase system transport import across plasma membrane carbohydrate import across plasma membrane carbohydrate transport establishment of localization transmembrane transport localization cellular process carbohydrate transmembrane transport	cell periphery cellular anatomical structure plasma membrane membrane
B [auth Z], E [auth D], H [auth G]	PTS mannose family transporter subunit IID	-	import into cell phosphoenolpyruvate-dependent sugar phosphotransferase system transport import across plasma membrane carbohydrate import across plasma membrane carbohydrate transport establishment of localization transmembrane transport localization cellular process carbohydrate transmembrane transport	cell periphery cellular anatomical structure plasma membrane membrane
C [auth A], F [auth E], I [auth H]	Bacteriocin pediocin PA-1	-	defense response to bacterium biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus cellular process disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism defense response to bacterium biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus cellular process disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism cell killing	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth Y], D [auth C], G [auth F]	IPR050303	GatZ/KbaZ carbohydrate metabolism	Family
A [auth Y], D [auth C], G [auth F]	IPR004700	Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit	Family
B [auth Z], E [auth D], H [auth G]	IPR050303	GatZ/KbaZ carbohydrate metabolism	Family
B [auth Z], E [auth D], H [auth G]	IPR004704	Phosphotransferase system, mannose/fructose/sorbose family IID component	Family
C [auth A], F [auth E], I [auth H]	IPR002633	Bacteriocin, class IIa	Family
C [auth A], F [auth E], I [auth H]	IPR023388	Bacteriocin class IIa domain superfamily	Homologous Superfamily
C [auth A], F [auth E], I [auth H]	IPR023384	Bacteriocin, class IIa, conserved site	Conserved Site
C [auth A], F [auth E], I [auth H]	IPR010133	Bacteriocin-type signal sequence	Conserved Site

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth Y], B [auth Z], D [auth C], E [auth D], G [auth F] A [auth Y], B [auth Z], D [auth C], E [auth D], G [auth F], H [auth G]	OPM	Transmembrane	Alpha-helical polytopic	PTS system mannose/fructose/sorbose family	PTS system mannose/fructose/sorbose family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth Y], B [auth Z], D [auth C], E [auth D], G [auth F] A [auth Y], B [auth Z], D [auth C], E [auth D], G [auth F], H [auth G]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A [auth Y], B [auth Z], D [auth C], E [auth D], G [auth F] A [auth Y], B [auth Z], D [auth C], E [auth D], G [auth F], H [auth G]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth Y], B [auth Z], D [auth C], E [auth D], G [auth F] A [auth Y], B [auth Z], D [auth C], E [auth D], G [auth F], H [auth G]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Phosphoenolpyruvate-Dependent Phosphotransferases (PTSs)	Mannose-phosphotransferease system (man-PTS)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.