7VA4 | pdb_00007va4

Telomeric tetranucleosome in open state


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ZSCOP2B SuperfamilyCore histone-like 8039341 3001387 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyCore histone-like 8039341 3001387 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyCore histone-like 8039341 3001387 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyCore histone-like 8039341 3001387 SCOP2B (2022-06-29)
J [auth H]SCOP2B SuperfamilyCore histone-like 8039341 3001387 SCOP2B (2022-06-29)
HA [auth h]SCOP2B SuperfamilyCore histone-like 8039341 3001387 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyCore histone-like 8039341 3001387 SCOP2B (2022-06-29)
DA [auth d]SCOP2B SuperfamilyCore histone-like 8039341 3001387 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
USCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
GA [auth g]SCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
CA [auth c]SCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
FA [auth f]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
BA [auth b]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
EA [auth e]SCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
AA [auth a]SCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZHistonee7va4Z1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
VHistonee7va4V1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
RHistonee7va4R1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
NHistonee7va4N1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
J [auth H]Histonee7va4H1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
HA [auth h]Histonee7va4h1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
F [auth D]Histonee7va4D1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
DA [auth d]Histonee7va4d1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
YHistone_1e7va4Y1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
UHistone_1e7va4U1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
QHistone_1e7va4Q1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
MHistone_1e7va4M1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
I [auth G]Histone_1e7va4G1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
GA [auth g]Histone_1e7va4g1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
E [auth C]Histone_1e7va4C1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
CA [auth c]Histone_1e7va4c1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
XHistone_1e7va4X1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
THistone_1e7va4T1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
PHistone_1e7va4P1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
LHistone_1e7va4L1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
H [auth F]Histone_1e7va4F1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
FA [auth f]Histone_1e7va4f1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
D [auth B]Histone_1e7va4B1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
BA [auth b]Histone_1e7va4b1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
WHistonee7va4W1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
SHistonee7va4S1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
OHistonee7va4O1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
KHistonee7va4K1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
G [auth E]Histonee7va4E1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
EA [auth e]Histonee7va4e1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
C [auth A]Histonee7va4A1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
AA [auth a]Histonee7va4a1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Histone H2B type 1-K
Histone H2A type 1-B/E
Histone H4
Histone H3.1
B [auth J]DNA (539-MER)---
A [auth I]DNA (539-MER)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR009072Histone-foldHomologous Superfamily
IPR000558Histone H2BFamily
IPR007125Core Histone H2A/H2B/H3 domainDomain
IPR055333Histone H2B, conserved siteConserved Site
IPR009072Histone-foldHomologous Superfamily
IPR002119Histone H2AFamily
IPR007125Core Histone H2A/H2B/H3 domainDomain
IPR032454Histone H2A, C-terminal domainDomain
IPR032458Histone H2A conserved siteConserved Site
IPR009072Histone-foldHomologous Superfamily
IPR035425CENP-T/Histone H4, histone foldDomain
IPR001951Histone H4Family
IPR019809Histone H4, conserved siteConserved Site
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
IPR009072Histone-foldHomologous Superfamily
IPR007125Core Histone H2A/H2B/H3 domainDomain
IPR000164Histone H3/CENP-AFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosO60814
PharosP04908
PharosP62805
PharosP68431