7V19

Local refinement of Band 3-II transmembrane domains, class 1 of erythrocyte ankyrin-1 complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth E]	SCOP2B Superfamily	Nucleobase/cation symporter 2 NCS2-like	8092954	3002647	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nucleobase/cation symporter 2 NCS2-like	8092954	3002647	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	PF01102	e7v19B1	A: extended segments	X: Glycophorin-A transmembrane domain (From Topology)	H: Glycophorin-A transmembrane domain (From Topology)	T: Glycophorin-A transmembrane domain	F: PF01102	ECOD (1.6)
B [auth D]	PF01102	e7v19D1	A: extended segments	X: Glycophorin-A transmembrane domain (From Topology)	H: Glycophorin-A transmembrane domain (From Topology)	T: Glycophorin-A transmembrane domain	F: PF01102	ECOD (1.6)
D [auth E]	PF00955	e7v19E1	A: alpha complex topology	X: Uracil Transporter UraA (From Topology)	H: Uracil Transporter UraA (From Topology)	T: Uracil Transporter UraA	F: PF00955	ECOD (1.6)
C	PF00955	e7v19C1	A: alpha complex topology	X: Uracil Transporter UraA (From Topology)	H: Uracil Transporter UraA (From Topology)	T: Uracil Transporter UraA	F: PF00955	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth D]	PF01102	Glycophorin A (Glycophorin_A)	Glycophorin A	-	Family
C, D [auth E]	PF00955	HCO3- transporter integral membrane domain (HCO3_cotransp)	HCO3- transporter integral membrane domain	This family contains Band 3 anion exchange proteins that exchange CL-/HCO3- such as Swiss:P48751. This family also includes cotransporters of Na+/HCO3- such as Swiss:O15153.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth D]	Glycophorin-A	protein binding binding virus receptor activity exogenous protein binding identical protein binding	-	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cell periphery plasma membrane membrane ankyrin-1 complex protein-containing complex membrane protein complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cell periphery plasma membrane membrane ankyrin-1 complex protein-containing complex membrane protein complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen
C, D [auth E]	Band 3 anion transport protein	cytoskeletal protein binding ankyrin binding protein binding binding hemoglobin binding bicarbonate transmembrane transporter activity transporter activity transmembrane transporter activity organic anion transmembrane transporter activity chloride transmembrane transporter activity monoatomic anion transmembrane transporter activity bicarbonate:monoatomic anion antiporter activity secondary active transmembrane transporter activity antiporter activity cytoskeletal protein binding ankyrin binding protein binding binding hemoglobin binding bicarbonate transmembrane transporter activity transporter activity transmembrane transporter activity organic anion transmembrane transporter activity chloride transmembrane transporter activity monoatomic anion transmembrane transporter activity bicarbonate:monoatomic anion antiporter activity secondary active transmembrane transporter activity antiporter activity active monoatomic ion transmembrane transporter activity active transmembrane transporter activity inorganic molecular entity transmembrane transporter activity chloride:bicarbonate antiporter activity monoatomic ion transmembrane transporter activity inorganic anion transmembrane transporter activity solute:inorganic anion antiporter activity protein-membrane adaptor activity protein-macromolecule adaptor activity molecular adaptor activity identical protein binding protein homodimerization activity protein dimerization activity	multicellular organismal process regulation of body fluid levels wound healing response to stimulus hemostasis biological regulation blood coagulation response to stress coagulation regulation of biological quality response to wounding developmental process erythrocyte development cellular developmental process multicellular organismal process regulation of body fluid levels wound healing response to stimulus hemostasis biological regulation blood coagulation response to stress coagulation regulation of biological quality response to wounding developmental process erythrocyte development cellular developmental process homeostatic process hemopoiesis cell development erythrocyte differentiation multicellular organismal-level homeostasis myeloid cell differentiation immune system process cell differentiation anatomical structure development myeloid cell development homeostasis of number of cells cellular process myeloid cell homeostasis erythrocyte homeostasis transport monoatomic ion transmembrane transport inorganic ion transmembrane transport inorganic anion transmembrane transport establishment of localization chloride transport transmembrane transport localization chloride transmembrane transport monoatomic anion transport monoatomic anion transmembrane transport monoatomic ion transport inorganic anion transport cellular homeostasis chemical homeostasis monoatomic ion homeostasis intracellular chemical homeostasis intracellular monoatomic ion homeostasis bicarbonate transport organic anion transport organic substance transport protein localization protein localization to cell periphery cellular localization protein localization to plasma membrane cellular macromolecule localization macromolecule localization localization within membrane protein localization to membrane renal system process system process regulation of urine volume negative regulation of urine volume membrane organization phospholipid translocation lipid localization phospholipid transport lipid transport lipid translocation regulation of membrane lipid distribution plasma membrane phospholipid scrambling cellular component organization plasma membrane organization cellular component organization or biogenesis endomembrane system organization organophosphate ester transport pH elevation regulation of pH monoatomic cation homeostasis pyridine nucleotide catabolic process oxoacid metabolic process carbohydrate catabolic process organophosphate catabolic process carbohydrate derivative metabolic process regulation of generation of precursor metabolites and energy nucleoside phosphate catabolic process organic acid metabolic process regulation of primary metabolic process regulation of ATP metabolic process regulation of purine nucleotide catabolic process negative regulation of nucleotide metabolic process regulation of small molecule metabolic process regulation of nucleotide metabolic process regulation of phosphate metabolic process phosphate-containing compound metabolic process small molecule metabolic process purine ribonucleotide catabolic process negative regulation of carbohydrate metabolic process nucleoside phosphate metabolic process organonitrogen compound catabolic process pyruvate metabolic process cellular metabolic process negative regulation of metabolic process negative regulation of purine nucleotide catabolic process purine nucleoside diphosphate metabolic process primary metabolic process purine-containing compound catabolic process regulation of purine nucleotide metabolic process nucleobase-containing compound catabolic process nucleoside diphosphate metabolic process metabolic process regulation of phosphorus metabolic process monocarboxylic acid metabolic process pyridine-containing compound catabolic process ribose phosphate metabolic process ATP metabolic process negative regulation of purine nucleotide metabolic process negative regulation of phosphate metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process negative regulation of nucleotide catabolic process purine nucleotide catabolic process carbohydrate derivative catabolic process regulation of glycolytic process through fructose-6-phosphate organic cyclic compound catabolic process purine-containing compound metabolic process ADP metabolic process negative regulation of phosphorus metabolic process purine ribonucleoside diphosphate metabolic process organic substance catabolic process purine ribonucleoside diphosphate catabolic process negative regulation of glycolytic process through fructose-6-phosphate ribonucleotide catabolic process regulation of cellular process negative regulation of small molecule metabolic process negative regulation of glycolytic process negative regulation of biological process negative regulation of ATP metabolic process negative regulation of cellular metabolic process nucleobase-containing compound metabolic process glycolytic process pyridine-containing compound metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process phosphorus metabolic process pyridine nucleotide metabolic process nicotinamide nucleotide metabolic process regulation of carbohydrate catabolic process regulation of biological process regulation of cellular metabolic process nucleotide metabolic process organic cyclic compound metabolic process purine nucleoside diphosphate catabolic process nucleoside diphosphate catabolic process regulation of nucleotide catabolic process nucleoside triphosphate metabolic process purine ribonucleotide metabolic process regulation of metabolic process catabolic process organic substance metabolic process purine nucleotide metabolic process ribonucleotide metabolic process negative regulation of cellular process ribonucleoside diphosphate metabolic process ribonucleoside diphosphate catabolic process regulation of carbohydrate metabolic process nucleotide catabolic process ribonucleoside triphosphate metabolic process negative regulation of catabolic process purine nucleoside triphosphate metabolic process carbohydrate metabolic process organonitrogen compound metabolic process ADP catabolic process carboxylic acid metabolic process regulation of catabolic process generation of precursor metabolites and energy regulation of glycolytic process organophosphate metabolic process glycolytic process through fructose-6-phosphate regulation of intracellular pH intracellular monoatomic cation homeostasis regulation of cellular pH	membrane cellular anatomical entity intracellular anatomical structure Z disc sarcomere intracellular organelle I band organelle intracellular non-membrane-bounded organelle contractile muscle fiber cytoplasm supramolecular fiber myofibril supramolecular polymer membrane cellular anatomical entity intracellular anatomical structure Z disc sarcomere intracellular organelle I band organelle intracellular non-membrane-bounded organelle contractile muscle fiber cytoplasm supramolecular fiber myofibril supramolecular polymer supramolecular complex non-membrane-bounded organelle ankyrin-1 complex protein-containing complex membrane protein complex extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle cell periphery plasma membrane basal part of cell basal plasma membrane plasma membrane region basolateral plasma membrane blood microparticle cytoplasmic side of plasma membrane cytoplasmic side of membrane side of membrane cell cortex cortical cytoskeleton cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth D]	IPR018938	Glycophorin, conserved site	Conserved Site
A [auth B], B [auth D]	IPR001195	Glycophorin	Family
A [auth B], B [auth D]	IPR049535	Glycophorin A/B	Family
C, D [auth E]	IPR013769	Band 3 cytoplasmic domain	Domain
C, D [auth E]	IPR001717	Anion exchange protein	Family
C, D [auth E]	IPR003020	Bicarbonate transporter, eukaryotic	Family
C, D [auth E]	IPR011531	Bicarbonate transporter-like, transmembrane domain	Domain
C, D [auth E]	IPR002977	Anion exchange protein 1	Family
C, D [auth E]	IPR016152	Phosphotransferase/anion transporter	Homologous Superfamily
C, D [auth E]	IPR018241	Anion exchange, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth B], B [auth D]	Pharos: P02724	malaria skin neoplasm skin cancer chronic obstructive pulmonary disease osteosarcoma sarcoidosis MALT lymphoma
C, D [auth E]	Pharos: P02730	hereditary elliptocytosis hereditary spherocytosis renal tubular acidosis hereditary spherocytosis type 4 cryohydrocytosis southeast Asian ovalocytosis hemolytic anemia renal tubular acidosis, distal, 4, with hemolytic anemia malaria hematologic disease Ovalocytosis, Malaysian-Melanesian-Filipino Type autosomal dominant distal renal tubular acidosis familial hemolytic anemia distal renal tubular acidosis MALT lymphoma hereditary elliptocytosis hereditary spherocytosis renal tubular acidosis hereditary spherocytosis type 4 cryohydrocytosis southeast Asian ovalocytosis hemolytic anemia renal tubular acidosis, distal, 4, with hemolytic anemia malaria hematologic disease Ovalocytosis, Malaysian-Melanesian-Filipino Type autosomal dominant distal renal tubular acidosis familial hemolytic anemia distal renal tubular acidosis MALT lymphoma renal tubular acidosis, distal, 3, with or without sensorineural hearing loss tuberculosis psoriasis osteosarcoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth B], B [auth D], C, D [auth E]	OPM	Transmembrane	Alpha-helical polytopic	APC (Amino acid-Polyamine-organoCation) superfamily	Anion exchanger family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth B], B [auth D], C, D [auth E]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth B], B [auth D], C, D [auth E]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Solute Carrier Family 4 (anion exchanger)	Erythrocyte Band 3 anion exchanger complex. Band 3-Glycophorin A complex, outward facing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.