7UDT | pdb_00007udt

cryo-EM structure of the rigor state wild type myosin-15-F-actin complex (symmetry expansion and re-centering)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth A]	SCOP2B Superfamily	Actin-like ATPases	8043436	3000092	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Actin-like ATPases	8043438	3000092	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Actin-like ATPases	8043438	3000092	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Actin-like ATPases	8043436	3000092	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Actin-like ATPases	8043436	3000092	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Actin-like ATPases	8043438	3000092	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth A]	Actin_1st	e7udtA2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Actin_1st	ECOD (1.6)
B [auth A]	Actin_2nd	e7udtA1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Actin_2nd	ECOD (1.6)
D [auth C]	Actin_1st	e7udtC2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Actin_1st	ECOD (1.6)
D [auth C]	Actin_2nd	e7udtC1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Actin_2nd	ECOD (1.6)
C [auth B]	Actin_1st	e7udtB1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Actin_1st	ECOD (1.6)
C [auth B]	Actin_2nd	e7udtB2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Actin_2nd	ECOD (1.6)
A [auth G]	EF-hand_7_8	e7udtG2	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: EF-hand_7_8	ECOD (1.6)
A [auth G]	EF-hand_7_4	e7udtG1	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: EF-hand_7_4	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth G]	1.10.238.10	Mainly Alpha	Orthogonal Bundle	Recoverin	domain 1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E [auth D]	PF00612	IQ calmodulin-binding motif (IQ)	IQ calmodulin-binding motif	-	Motif
E [auth D]	PF00063	Myosin head (motor domain) (Myosin_head)	Myosin head (motor domain)		Domain
B [auth A], C [auth B], D [auth C]	PF00022	Actin (Actin)	Actin	-	Family
A [auth G]	PF13499	EF-hand domain pair (EF-hand_7)	EF-hand domain pair		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth D]	Unconventional myosin-XV	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding polypeptide conformation or assembly isomerase activity isomerase activity cytoskeletal motor activity microfilament motor activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity	behavior multicellular organismal process locomotory behavior developmental process ear morphogenesis embryonic organ morphogenesis ear development sensory organ development animal organ development embryonic morphogenesis embryo development multicellular organism development anatomical structure morphogenesis sensory organ morphogenesis behavior multicellular organismal process locomotory behavior developmental process ear morphogenesis embryonic organ morphogenesis ear development sensory organ development animal organ development embryonic morphogenesis embryo development multicellular organism development anatomical structure morphogenesis sensory organ morphogenesis inner ear development inner ear morphogenesis anatomical structure development animal organ morphogenesis embryonic organ development localization import into cell transport cellular process endocytosis establishment of localization vesicle-mediated transport response to light stimulus response to stimulus response to radiation response to abiotic stimulus system process sensory perception nervous system process sensory perception of sound sensory perception of mechanical stimulus cellular component organization organelle organization actin cytoskeleton organization actin filament organization actin filament-based process cellular component organization or biogenesis supramolecular fiber organization cytoskeleton organization	cellular anatomical structure membrane intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol protein-containing complex myosin complex cell projection cellular anatomical structure membrane intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol protein-containing complex myosin complex cell projection actin-based cell projection plasma membrane bounded cell projection stereocilium stereocilium bundle neuron projection cluster of actin-based cell projections
B [auth A], C [auth B], D [auth C]	Actin, alpha skeletal muscle	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding hydrolase activity catalytic activity	cellular developmental process cellular component assembly involved in morphogenesis skeletal myofibril assembly cell development membraneless organelle assembly muscle cell differentiation cellular component organization cellular component biogenesis muscle structure development striated muscle cell development cellular anatomical entity morphogenesis cellular component assembly muscle cell development cell differentiation actin filament-based process cellular developmental process cellular component assembly involved in morphogenesis skeletal myofibril assembly cell development membraneless organelle assembly muscle cell differentiation cellular component organization cellular component biogenesis muscle structure development striated muscle cell development cellular anatomical entity morphogenesis cellular component assembly muscle cell development cell differentiation actin filament-based process anatomical structure development cellular component organization or biogenesis developmental process skeletal muscle thin filament assembly actin cytoskeleton organization actomyosin structure organization organelle assembly actin filament organization anatomical structure morphogenesis organelle organization myofibril assembly anatomical structure formation involved in morphogenesis cellular process striated muscle cell differentiation supramolecular fiber organization cytoskeleton organization myotube cell development skeletal muscle fiber development skeletal muscle tissue development animal organ development tissue development myotube differentiation striated muscle tissue development skeletal muscle organ development muscle tissue development muscle organ development	polymeric cytoskeletal fiber intracellular anatomical structure actin filament intracellular membraneless organelle actin cytoskeleton intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle supramolecular fiber supramolecular polymer supramolecular complex striated muscle thin filament polymeric cytoskeletal fiber intracellular anatomical structure actin filament intracellular membraneless organelle actin cytoskeleton intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle supramolecular fiber supramolecular polymer supramolecular complex striated muscle thin filament myofilament sarcomere contractile muscle fiber cytoplasm myofibril actin filament bundle actomyosin stress fiber contractile actin filament bundle
A [auth G]	regulatory light chain	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding myosin heavy chain binding cytoskeletal protein binding protein binding myosin binding	-	protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton myosin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle myosin II complex cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth D]	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
E [auth D]	IPR000299	FERM domain	Domain
E [auth D]	IPR001609	Myosin head, motor domain-like	Domain
E [auth D]	IPR019748	FERM central domain	Domain
E [auth D]	IPR036028	SH3-like domain superfamily	Homologous Superfamily
E [auth D]	IPR051567	Unconventional Myosin ATPase	Family
E [auth D]	IPR011993	PH-like domain superfamily	Homologous Superfamily
E [auth D]	IPR000048	IQ motif, EF-hand binding site	Binding Site
E [auth D]	IPR038185	MyTH4 domain superfamily	Homologous Superfamily
E [auth D]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
E [auth D]	IPR035963	FERM superfamily, second domain	Homologous Superfamily
E [auth D]	IPR041795	Myosin-XV, FERM domain C-lobe	Domain
E [auth D]	IPR000857	MyTH4 domain	Domain
E [auth D]	IPR001452	SH3 domain	Domain
E [auth D]	IPR059004	Unconventional myosin-XV-like domain	Domain
E [auth D]	IPR036057	Class XV myosin, motor domain	Domain
B [auth A], C [auth B], D [auth C]	IPR020902	Actin/actin-like conserved site	Conserved Site
B [auth A], C [auth B], D [auth C]	IPR004001	Actin, conserved site	Conserved Site
B [auth A], C [auth B], D [auth C]	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
B [auth A], C [auth B], D [auth C]	IPR004000	Actin family	Family
A [auth G]	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
A [auth G]	IPR002048	EF-hand domain	Domain
A [auth G]	IPR011992	EF-hand domain pair	Homologous Superfamily
A [auth G]	IPR050403	Myosin regulatory light chain	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth A], C [auth B], D [auth C]	HIC	Parent Component: HIS RESID: AA0317 PSI-MOD : 1'-methyl-L-histidine MOD:00322