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 7U0I | pdb_00007u0i

Structure of LIN28b nucleosome bound 2 OCT4


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
NAsparaginase_2e7u0iN1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Asparaginase_2ECOD (v295.2)
M [auth K]Asparaginase_2e7u0iK1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Asparaginase_2ECOD (v295.2)
L [auth M]Asparaginase_2e7u0iM1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Asparaginase_2ECOD (v295.2)
K [auth L]Asparaginase_2e7u0iL1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Asparaginase_2ECOD (v295.2)
HAsparaginase_2e7u0iH1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Asparaginase_2ECOD (v295.2)
DAsparaginase_2e7u0iD1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Asparaginase_2ECOD (v295.2)
GAsparaginase_2e7u0iG1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Asparaginase_2ECOD (v295.2)
CAsparaginase_2e7u0iC1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Asparaginase_2ECOD (v295.2)
FAsparaginase_2e7u0iF1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Asparaginase_2ECOD (v295.2)
BAsparaginase_2e7u0iB1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Asparaginase_2ECOD (v295.2)
EAsparaginase_2e7u0iE1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Asparaginase_2ECOD (v295.2)
AAsparaginase_2e7u0iA1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Asparaginase_2ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
N2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
M [auth K]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
K [auth L],
L [auth M]
PF00157Pou domain - N-terminal to homeobox domain (Pou)Pou domain - N-terminal to homeobox domainDomain
C, G
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
B, F
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
A, E
PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
M [auth K],
N
Single-chain variable fragment---
K [auth L],
L [auth M]
Maltodextrin-binding protein,POU domain, class 5, transcription factor 1
DNA (162-MER)---
DNA (162-MER)---
D, H
Histone H2B type 2-E
C, G
Histone H2A type 2-C
B, F
Histone H4
A, E
Histone H3.1

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
K [auth L],
L [auth M]
:  Q01860
D, H
:  Q16778
C, G
:  Q16777
B, F
:  P62805
A, E
:  P68431