7TVZ | pdb_00007tvz

Cryo-EM structure of human band 3-protein 4.2 complex in diagonal conformation

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Nucleobase/cation symporter 2, NCS2-like	8092954	3002647	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Phoshotransferase/anion transport protein	8033412	3000490	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Phoshotransferase/anion transport protein	8033412	3000490	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Nucleobase/cation symporter 2, NCS2-like	8092954	3002647	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth E]	Transglut_N	e7tvzE2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Transglut_N	ECOD (1.6)
C [auth E]	Transglut_C_1	e7tvzE3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Transglut_C_1	ECOD (1.6)
C [auth E]	Transglut_C	e7tvzE4	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Transglut_C	ECOD (1.6)
C [auth E]	Transglut_core	e7tvzE1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: Transglut_core	ECOD (1.6)
B	HCO3_cotransp	e7tvzB1	A: alpha complex topology	X: Uracil Transporter UraA (From Topology)	H: Uracil Transporter UraA (From Topology)	T: Uracil Transporter UraA	F: HCO3_cotransp	ECOD (1.6)
B	Band_3_cyto	e7tvzB2	A: a+b three layers	X: Phoshotransferase/anion transport protein (From Topology)	H: Phoshotransferase/anion transport protein (From Topology)	T: Phoshotransferase/anion transport protein	F: Band_3_cyto	ECOD (1.6)
A	HCO3_cotransp	e7tvzA1	A: alpha complex topology	X: Uracil Transporter UraA (From Topology)	H: Uracil Transporter UraA (From Topology)	T: Uracil Transporter UraA	F: HCO3_cotransp	ECOD (1.6)
A	Band_3_cyto	e7tvzA2	A: a+b three layers	X: Phoshotransferase/anion transport protein (From Topology)	H: Phoshotransferase/anion transport protein (From Topology)	T: Phoshotransferase/anion transport protein	F: Band_3_cyto	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth E]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
C [auth E]	3.90.260.10	Alpha Beta	Alpha-Beta Complex	Coagulation Factor XIII	Chain A, domain 2	CATH (utative)
A	3.40.930.10	Alpha Beta	3-Layer(aba) Sandwich	Mannitol-specific EII	Chain A	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth E]	PF00868	Transglutaminase family (Transglut_N)	Transglutaminase family		Domain
C [auth E]	PF00927	Transglutaminase family, C-terminal ig like domain (Transglut_C)	Transglutaminase family, C-terminal ig like domain		Domain
C [auth E]	PF01841	Transglutaminase-like superfamily (Transglut_core)	Transglutaminase-like superfamily	This domain is found in animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that ...	This domain is found in animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' [1]. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase [2], it is proposed that many, if not all, microbial homologues of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease. [3]	Domain
A, B	PF00955	HCO3- transporter integral membrane domain (HCO3_cotransp)	HCO3- transporter integral membrane domain	This family contains Band 3 anion exchange proteins that exchange CL-/HCO3- such as Swiss:P48751. This family also includes cotransporters of Na+/HCO3- such as Swiss:O15153.	Domain
A, B	PF07565	Band 3 cytoplasmic domain (Band_3_cyto)	Band 3 cytoplasmic domain	This family contains the cytoplasmic domain of the Band 3 anion exchange proteins that exchange Cl-/HCO3-. Band 3 constitutes the most abundant polypeptide in the red blood cell membrane, comprising 25% of the total membrane protein. The cytoplasmic ...	This family contains the cytoplasmic domain of the Band 3 anion exchange proteins that exchange Cl-/HCO3-. Band 3 constitutes the most abundant polypeptide in the red blood cell membrane, comprising 25% of the total membrane protein. The cytoplasmic domain of band 3 functions primarily as an anchoring site for other membrane-associated proteins. Included among the protein ligands of cdb3 are ankyrin, protein 4.2, protein 4.1, glyceraldehyde-3-phosphate dehydrogenase (GAPDH), phosphofructokinase, aldolase, hemoglobin, hemichromes, and the protein tyrosine kinase (p72syk). [1]	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth E]	Protein 4.2	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding structural constituent of cytoskeleton structural molecule activity aminoacyltransferase activity protein-glutamine gamma-glutamyltransferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity	developmental process regulation of biological process regulation of developmental process biological regulation regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of biological quality regulation of anatomical structure morphogenesis metabolic process cellular process primary metabolic process developmental process regulation of biological process regulation of developmental process biological regulation regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of biological quality regulation of anatomical structure morphogenesis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process hemoglobin metabolic process immune system development multicellular organism development multicellular organismal process spleen development immune system process animal organ development hematopoietic or lymphoid organ development system development multicellular organismal-level iron ion homeostasis inorganic ion homeostasis multicellular organismal-level homeostasis chemical homeostasis homeostatic process multicellular organismal-level chemical homeostasis monoatomic ion homeostasis monoatomic cation homeostasis erythrocyte development cellular developmental process hemopoiesis cell development erythrocyte maturation developmental maturation erythrocyte differentiation anatomical structure maturation myeloid cell differentiation cell differentiation myeloid cell development homeostasis of number of cells cell maturation myeloid cell homeostasis erythrocyte homeostasis	ankyrin-1 complex protein-containing complex cellular anatomical structure membrane membrane protein complex intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle cell periphery plasma membrane cell cortex ankyrin-1 complex protein-containing complex cellular anatomical structure membrane membrane protein complex intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle cell periphery plasma membrane cell cortex cortical cytoskeleton cytoplasm
A, B	Band 3 anion transport protein	cytoskeletal protein binding ankyrin binding protein binding binding hemoglobin binding bicarbonate transmembrane transporter activity transporter activity transmembrane transporter activity chloride transmembrane transporter activity monoatomic anion transmembrane transporter activity bicarbonate:monoatomic anion antiporter activity secondary active transmembrane transporter activity antiporter activity active transmembrane transporter activity cytoskeletal protein binding ankyrin binding protein binding binding hemoglobin binding bicarbonate transmembrane transporter activity transporter activity transmembrane transporter activity chloride transmembrane transporter activity monoatomic anion transmembrane transporter activity bicarbonate:monoatomic anion antiporter activity secondary active transmembrane transporter activity antiporter activity active transmembrane transporter activity chloride:bicarbonate antiporter activity monoatomic ion transmembrane transporter activity solute:inorganic anion antiporter activity protein-membrane adaptor activity protein-macromolecule adaptor activity molecular adaptor activity identical protein binding protein homodimerization activity protein dimerization activity	multicellular organismal process regulation of body fluid levels wound healing response to stimulus hemostasis biological regulation blood coagulation response to stress coagulation regulation of biological quality response to wounding developmental process erythrocyte development cellular developmental process multicellular organismal process regulation of body fluid levels wound healing response to stimulus hemostasis biological regulation blood coagulation response to stress coagulation regulation of biological quality response to wounding developmental process erythrocyte development cellular developmental process homeostatic process hemopoiesis cell development erythrocyte differentiation multicellular organismal-level homeostasis myeloid cell differentiation immune system process cell differentiation anatomical structure development myeloid cell development homeostasis of number of cells cellular process myeloid cell homeostasis erythrocyte homeostasis transport monoatomic ion transmembrane transport establishment of localization chloride transport transmembrane transport localization chloride transmembrane transport monoatomic anion transport monoatomic anion transmembrane transport monoatomic ion transport inorganic anion transport cellular homeostasis chemical homeostasis monoatomic ion homeostasis intracellular chemical homeostasis intracellular monoatomic ion homeostasis bicarbonate transport organic anion transport protein localization to cell periphery cellular localization protein localization to plasma membrane macromolecule localization intracellular protein localization localization within membrane protein localization to membrane renal system process system process regulation of urine volume negative regulation of urine volume membrane organization phospholipid translocation lipid localization phospholipid transport lipid transport lipid translocation regulation of membrane lipid distribution plasma membrane phospholipid scrambling cellular component organization plasma membrane organization cellular component organization or biogenesis endomembrane system organization organophosphate ester transport pH elevation regulation of pH monoatomic cation homeostasis ribonucleotide catabolic process pyridine nucleotide catabolic process aerobic respiration regulation of cellular process negative regulation of small molecule metabolic process negative regulation of glycolytic process oxoacid metabolic process negative regulation of biological process carbohydrate catabolic process organophosphate catabolic process carbohydrate derivative metabolic process regulation of generation of precursor metabolites and energy nucleoside phosphate catabolic process organic acid metabolic process negative regulation of ATP metabolic process regulation of primary metabolic process regulation of ATP metabolic process nucleobase-containing compound metabolic process regulation of purine nucleotide catabolic process negative regulation of nucleotide metabolic process regulation of small molecule metabolic process glycolytic process regulation of nucleotide metabolic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process small molecule metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process purine ribonucleotide catabolic process phosphorus metabolic process negative regulation of carbohydrate metabolic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process pyruvate metabolic process regulation of carbohydrate catabolic process regulation of biological process negative regulation of metabolic process negative regulation of purine nucleotide catabolic process purine nucleoside diphosphate metabolic process primary metabolic process purine-containing compound catabolic process nucleotide metabolic process regulation of purine nucleotide metabolic process nucleobase-containing compound catabolic process nucleoside diphosphate metabolic process purine nucleoside diphosphate catabolic process nucleoside diphosphate catabolic process regulation of nucleotide catabolic process metabolic process regulation of phosphorus metabolic process nucleoside triphosphate metabolic process monocarboxylic acid metabolic process purine ribonucleotide metabolic process regulation of metabolic process pyridine-containing compound catabolic process ribose phosphate metabolic process cellular respiration catabolic process ATP metabolic process negative regulation of purine nucleotide metabolic process energy derivation by oxidation of organic compounds negative regulation of phosphate metabolic process purine nucleotide metabolic process ribonucleotide metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process negative regulation of cellular process ribonucleoside diphosphate metabolic process ribonucleoside diphosphate catabolic process regulation of carbohydrate metabolic process nucleotide catabolic process negative regulation of nucleotide catabolic process negative regulation of catabolic process purine nucleoside triphosphate metabolic process purine nucleotide catabolic process carbohydrate metabolic process carbohydrate derivative catabolic process regulation of glycolytic process through fructose-6-phosphate ADP catabolic process carboxylic acid metabolic process regulation of catabolic process generation of precursor metabolites and energy regulation of glycolytic process purine-containing compound metabolic process ADP metabolic process organophosphate metabolic process negative regulation of phosphorus metabolic process purine ribonucleoside diphosphate metabolic process purine ribonucleoside diphosphate catabolic process negative regulation of glycolytic process through fructose-6-phosphate glycolytic process through fructose-6-phosphate regulation of intracellular pH intracellular monoatomic cation homeostasis regulation of cellular pH	cellular anatomical structure membrane intracellular anatomical structure intracellular membraneless organelle Z disc sarcomere intracellular organelle I band organelle membraneless organelle contractile muscle fiber cytoplasm supramolecular fiber myofibril cellular anatomical structure membrane intracellular anatomical structure intracellular membraneless organelle Z disc sarcomere intracellular organelle I band organelle membraneless organelle contractile muscle fiber cytoplasm supramolecular fiber myofibril supramolecular polymer supramolecular complex ankyrin-1 complex protein-containing complex membrane protein complex extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle cell periphery plasma membrane basal part of cell basal plasma membrane plasma membrane region basolateral plasma membrane blood microparticle cytoplasmic side of plasma membrane cytoplasmic side of membrane side of membrane cell cortex cortical cytoskeleton cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth E]	IPR036985	Transglutaminase-like superfamily	Homologous Superfamily
C [auth E]	IPR036238	Transglutaminase, C-terminal domain superfamily	Homologous Superfamily
C [auth E]	IPR013808	Transglutaminase, active site	Active Site
C [auth E]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
C [auth E]	IPR002931	Transglutaminase-like	Domain
C [auth E]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
C [auth E]	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
C [auth E]	IPR001102	Transglutaminase, N-terminal	Domain
C [auth E]	IPR008958	Transglutaminase, C-terminal	Domain
C [auth E]	IPR050779	Protein-glutamine gamma-glutamyltransferases	Family
C [auth E]	IPR023608	Protein-glutamine gamma-glutamyltransferase, animal	Family
A, B	IPR013769	Band 3 cytoplasmic domain	Domain
A, B	IPR001717	Anion exchange protein	Family
A, B	IPR003020	Bicarbonate transporter, eukaryotic	Family
A, B	IPR011531	Bicarbonate transporter-like, transmembrane domain	Domain
A, B	IPR002977	Anion exchange protein 1	Family
A, B	IPR016152	Phosphotransferase/anion transporter	Homologous Superfamily
A, B	IPR018241	Anion exchange, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth E]	Pharos: P16452	hereditary spherocytosis hereditary spherocytosis type 5 familial hemolytic anemia Anemia, hereditary spherocytic hemolytic ductal breast carcinoma in situ MALT lymphoma congenital anemia osteosarcoma hemolytic anemia invasive ductal breast carcinoma ovarian cancer
A, B	Pharos: P02730	hereditary elliptocytosis hereditary spherocytosis renal tubular acidosis hereditary spherocytosis type 4 cryohydrocytosis southeast Asian ovalocytosis hemolytic anemia renal tubular acidosis, distal, 4, with hemolytic anemia malaria hematologic disease Ovalocytosis, Malaysian-Melanesian-Filipino Type autosomal dominant distal renal tubular acidosis familial hemolytic anemia distal renal tubular acidosis MALT lymphoma hereditary elliptocytosis hereditary spherocytosis renal tubular acidosis hereditary spherocytosis type 4 cryohydrocytosis southeast Asian ovalocytosis hemolytic anemia renal tubular acidosis, distal, 4, with hemolytic anemia malaria hematologic disease Ovalocytosis, Malaysian-Melanesian-Filipino Type autosomal dominant distal renal tubular acidosis familial hemolytic anemia distal renal tubular acidosis MALT lymphoma renal tubular acidosis, distal, 3, with or without sensorineural hearing loss tuberculosis psoriasis osteosarcoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C [auth E]	OPM	Transmembrane	Alpha-helical polytopic	APC (Amino acid-Polyamine-organoCation) superfamily	Anion exchanger family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C [auth E]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C [auth E]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Solute Carrier Family 4 (anion exchanger)	Band 3 (AE1) anion exchanger dimer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.