7TMS | pdb_00007tms

V-ATPase from Saccharomyces cerevisiae, State 2

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	ARM repeat-like	8033221	3000116	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	adh_short_C2	e7tmsP1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
O	adh_short_C2	e7tmsO1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
N	adh_short_C2	e7tmsN1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
M	adh_short_C2	e7tmsM1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
L	adh_short_C2	e7tmsL1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
J	adh_short_C2	e7tmsJ1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
H	adh_short_C2	e7tmsH1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
K	adh_short_C2	e7tmsK1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
I	adh_short_C2	e7tmsI1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
G	adh_short_C2	e7tmsG1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
F	adh_short_C2	e7tmsF1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
D	adh_short_C2	e7tmsD1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
B	adh_short_C2	e7tmsB1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
EA [auth o]	adh_short_C2	e7tmso1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
Z [auth j]	adh_short_C2	e7tmsj1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
Y [auth i]	adh_short_C2	e7tmsi1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
X [auth h]	adh_short_C2	e7tmsh1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
W [auth g]	adh_short_C2	e7tmsg1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
DA [auth n]	adh_short_C2	e7tmsn1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
CA [auth m]	adh_short_C2	e7tmsm1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
BA [auth l]	adh_short_C2	e7tmsl1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
AA [auth k]	adh_short_C2	e7tmsk1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
T [auth d]	adh_short_C2	e7tmsd1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
E	adh_short_C2	e7tmsE1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
C	adh_short_C2	e7tmsC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)
A	adh_short_C2	e7tmsA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: adh_short_C2	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
P	PF11698	V-ATPase subunit H (V-ATPase_H_C)	V-ATPase subunit H	-	Repeat
P	PF03224	V-ATPase subunit H (V-ATPase_H_N)	V-ATPase subunit H	-	Repeat
O	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain
N	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain
M	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain
H, J, L	PF03179	Vacuolar (H+)-ATPase G subunit (V-ATPase_G)	Vacuolar (H+)-ATPase G subunit	-	Coiled-coil
H, J, L	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain
G, I, K	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain
B, D, F	PF20520	V0 complex accessory subunit Ac45/VOA1 transmembrane domain (Ac45-VOA1_TM)	V0 complex accessory subunit Ac45/VOA1 transmembrane domain	This entry represents the transmembrane domain from ER/Golgi membrane proteins including V0 complex accessory subunit Ac45 (ATP6AP1, also known as V-type proton ATPase subunit S1) from animals and the yeast homologue V0 assembly protein 1 (VOA1) whic ...	This entry represents the transmembrane domain from ER/Golgi membrane proteins including V0 complex accessory subunit Ac45 (ATP6AP1, also known as V-type proton ATPase subunit S1) from animals and the yeast homologue V0 assembly protein 1 (VOA1) which are essential for V0 ATPase assembly, stability and function [1,2]. In humans, mutations of ATP6AP1 cause immunodeficiency with hypogammaglobulinemia, hepatopathy and neurocognitive abnormalities [3]. This entry also includes ER membrane BIG1 proteins from yeast, involved in cell wall biogenesis.	Domain
B, D, F	PF01992	ATP synthase (C/AC39) subunit (vATP-synt_AC39)	ATP synthase (C/AC39) subunit	-	Family
A, C, E	PF05493	ATP synthase subunit H (ATP_synt_H)	ATP synthase subunit H	-	Family
A, C, E	PF01496	V-type ATPase 116kDa subunit family (V_ATPase_I)	V-type ATPase 116kDa subunit family	-	Family
A, C, E	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
Q [auth a]	IPR026028	ATPase, V0 complex, subunit 116kDa, eukaryotic	Family
Q [auth a]	IPR002490	V-type ATPase, V0 complex, 116kDa subunit family	Family
P	IPR004908	ATPase, V1 complex, subunit H	Family
P	IPR016024	Armadillo-type fold	Homologous Superfamily
P	IPR011989	Armadillo-like helical	Homologous Superfamily
P	IPR038497	ATPase, V1 complex, subunit H, C-terminal domain superfamily	Homologous Superfamily
P	IPR011987	ATPase, V1 complex, subunit H, C-terminal	Domain
H, J, L	IPR005124	Vacuolar (H+)-ATPase G subunit	Family
EA [auth o]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
EA [auth o]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain
EA [auth o]	IPR011555	V-ATPase proteolipid subunit C, eukaryotic	Family
EA [auth o]	IPR000245	V-ATPase proteolipid subunit	Family
AA [auth k], BA [auth l], CA [auth m], DA [auth n], W [auth g], AA [auth k], BA [auth l], CA [auth m], DA [auth n], W [auth g], X [auth h], Y [auth i], Z [auth j]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
AA [auth k], BA [auth l], CA [auth m], DA [auth n], W [auth g], AA [auth k], BA [auth l], CA [auth m], DA [auth n], W [auth g], X [auth h], Y [auth i], Z [auth j]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain
AA [auth k], BA [auth l], CA [auth m], DA [auth n], W [auth g], AA [auth k], BA [auth l], CA [auth m], DA [auth n], W [auth g], X [auth h], Y [auth i], Z [auth j]	IPR011555	V-ATPase proteolipid subunit C, eukaryotic	Family
AA [auth k], BA [auth l], CA [auth m], DA [auth n], W [auth g], AA [auth k], BA [auth l], CA [auth m], DA [auth n], W [auth g], X [auth h], Y [auth i], Z [auth j]	IPR000245	V-ATPase proteolipid subunit	Family
V [auth f]	IPR056552	Ribonucl_Kappa	Unknown
V [auth f]	IPR026770	Ribonuclease kappa	Family
U [auth e]	IPR008389	ATPase, V0 complex, subunit e1/e2	Family
T [auth d]	IPR044911	V-type ATP synthase C/D subunit, domain 3 superfamily	Homologous Superfamily
T [auth d]	IPR002843	ATPase, V0 complex, C/D subunit	Family
T [auth d]	IPR036079	V-type ATP synthase subunit C/D subunit superfamily	Homologous Superfamily
T [auth d]	IPR035067	V-type ATPase subunit C/D	Homologous Superfamily
T [auth d]	IPR016727	ATPase, V0 complex, subunit D	Family
S [auth c]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
S [auth c]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain
S [auth c]	IPR000245	V-ATPase proteolipid subunit	Family
R [auth b]	IPR046756	V-type proton ATPase subunit S1/VOA1, transmembrane domain	Domain
A, C, E	IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Domain
A, C, E	IPR022878	V-type ATP synthase catalytic alpha chain	Family
A, C, E	IPR024034	ATPase, F1/V1 complex, beta/alpha subunit, C-terminal	Homologous Superfamily
A, C, E	IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Homologous Superfamily
A, C, E	IPR031686	ATPsynthase alpha/beta subunit, barrel-sandwich domain	Domain
A, C, E	IPR023366	ATP synthase subunit alpha, N-terminal domain-like superfamily	Homologous Superfamily
A, C, E	IPR020003	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Active Site
A, C, E	IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Domain
A, C, E	IPR055190	ATP synthase A/B type, C-terminal domain	Domain
A, C, E	IPR005725	ATPase, V1 complex, subunit A	Family
A, C, E	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, AA [auth k], BA [auth l], C, CA [auth m] A, AA [auth k], BA [auth l], C, CA [auth m], DA [auth n], E, EA [auth o], H, J, L, P, Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e], V [auth f], W [auth g], X [auth h], Y [auth i], Z [auth j]	OPM	Transmembrane	Alpha-helical polytopic	Proton or Sodium translocating F-type, V-type and A-type ATPases	V-type and F-type ATPases

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.