7TMS | pdb_00007tms

V-ATPase from Saccharomyces cerevisiae, State 2

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	ARM repeat-like	8033221	3000116	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	V-ATPase_H_C	e7tmsP1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: V-ATPase_H_C	ECOD (1.6)
O	V-ATPase_C_1st	e7tmsO1	A: alpha bundles	X: helical bundle domain in vacuolar ATP synthase subunit C (From Topology)	H: helical bundle domain in vacuolar ATP synthase subunit C (From Topology)	T: helical bundle domain in vacuolar ATP synthase subunit C	F: V-ATPase_C_1st	ECOD (1.6)
O	V-ATPase_C_3rd	e7tmsO2	A: a+b two layers	X: Alpha-beta plaits	H: ferredoxin-like domain in vacuolar ATP synthase subunit C (From Topology)	T: ferredoxin-like domain in vacuolar ATP synthase subunit C	F: V-ATPase_C_3rd	ECOD (1.6)
O	V-ATPase_C_2nd	e7tmsO3	A: a+b two layers	X: Alpha-beta plaits	H: ferredoxin-like domain in vacuolar ATP synthase subunit C (From Topology)	T: ferredoxin-like domain in vacuolar ATP synthase subunit C	F: V-ATPase_C_2nd	ECOD (1.6)
N	ATP-synt_F	e7tmsN1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: AtpF-like (From Topology)	T: AtpF-like	F: ATP-synt_F	ECOD (1.6)
M	ATP-synt_D	e7tmsM1	A: alpha bundles	X: V-type proton ATPase subunit D (From Topology)	H: V-type proton ATPase subunit D (From Topology)	T: V-type proton ATPase subunit D	F: ATP-synt_D	ECOD (1.6)
H	V-ATPase_G	e7tmsH1	A: extended segments	X: V-type proton ATPase subunit G (From Topology)	H: V-type proton ATPase subunit G (From Topology)	T: V-type proton ATPase subunit G	F: V-ATPase_G	ECOD (1.6)
J	V-ATPase_G	e7tmsJ1	A: extended segments	X: V-type proton ATPase subunit G (From Topology)	H: V-type proton ATPase subunit G (From Topology)	T: V-type proton ATPase subunit G	F: V-ATPase_G	ECOD (1.6)
L	V-ATPase_G	e7tmsL1	A: extended segments	X: V-type proton ATPase subunit G (From Topology)	H: V-type proton ATPase subunit G (From Topology)	T: V-type proton ATPase subunit G	F: V-ATPase_G	ECOD (1.6)
I	vATP-synt_E_C	e7tmsI1	A: a+b two layers	X: FwdE/GAPDH domain-like	H: V-type ATPase subunit E (From Topology)	T: V-type ATPase subunit E	F: vATP-synt_E_C	ECOD (1.6)
I	vATP-synt_E_N	e7tmsI2	A: extended segments	X: Helical region in V-type proton ATPase subunit E (From Topology)	H: Helical region in V-type proton ATPase subunit E (From Topology)	T: Helical region in V-type proton ATPase subunit E	F: vATP-synt_E_N	ECOD (1.6)
K	vATP-synt_E_C	e7tmsK1	A: a+b two layers	X: FwdE/GAPDH domain-like	H: V-type ATPase subunit E (From Topology)	T: V-type ATPase subunit E	F: vATP-synt_E_C	ECOD (1.6)
K	vATP-synt_E_N	e7tmsK2	A: extended segments	X: Helical region in V-type proton ATPase subunit E (From Topology)	H: Helical region in V-type proton ATPase subunit E (From Topology)	T: Helical region in V-type proton ATPase subunit E	F: vATP-synt_E_N	ECOD (1.6)
G	vATP-synt_E_C	e7tmsG1	A: a+b two layers	X: FwdE/GAPDH domain-like	H: V-type ATPase subunit E (From Topology)	T: V-type ATPase subunit E	F: vATP-synt_E_C	ECOD (1.6)
G	vATP-synt_E_N	e7tmsG2	A: extended segments	X: Helical region in V-type proton ATPase subunit E (From Topology)	H: Helical region in V-type proton ATPase subunit E (From Topology)	T: Helical region in V-type proton ATPase subunit E	F: vATP-synt_E_N	ECOD (1.6)
F	ATP-synt_ab_N	e7tmsF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: ATP-synt_ab_N	ECOD (1.6)
F	ATP-synt_ab_C	e7tmsF2	A: alpha superhelices	X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)	H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)	T: C-terminal domain of alpha and beta subunits of F1 ATP synthase	F: ATP-synt_ab_C	ECOD (1.6)
F	ATP-synt_ab	e7tmsF3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: ATP-synt_ab	ECOD (1.6)
D	ATP-synt_ab_N	e7tmsD3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: ATP-synt_ab_N	ECOD (1.6)
D	ATP-synt_ab_C	e7tmsD2	A: alpha superhelices	X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)	H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)	T: C-terminal domain of alpha and beta subunits of F1 ATP synthase	F: ATP-synt_ab_C	ECOD (1.6)
D	ATP-synt_ab	e7tmsD1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: ATP-synt_ab	ECOD (1.6)
B	ATP-synt_ab_N	e7tmsB3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: ATP-synt_ab_N	ECOD (1.6)
B	ATP-synt_ab_C	e7tmsB1	A: alpha superhelices	X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)	H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)	T: C-terminal domain of alpha and beta subunits of F1 ATP synthase	F: ATP-synt_ab_C	ECOD (1.6)
B	ATP-synt_ab	e7tmsB2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: ATP-synt_ab	ECOD (1.6)
EA [auth o]	ATP-synt_C	e7tmso2	A: extended segments	X: F1F0 ATP synthase subunit C (From Topology)	H: F1F0 ATP synthase subunit C (From Topology)	T: F1F0 ATP synthase subunit C	F: ATP-synt_C	ECOD (1.6)
X [auth h]	ATP-synt_C	e7tmsh2	A: extended segments	X: F1F0 ATP synthase subunit C (From Topology)	H: F1F0 ATP synthase subunit C (From Topology)	T: F1F0 ATP synthase subunit C	F: ATP-synt_C	ECOD (1.6)
Z [auth j]	ATP-synt_C	e7tmsj2	A: extended segments	X: F1F0 ATP synthase subunit C (From Topology)	H: F1F0 ATP synthase subunit C (From Topology)	T: F1F0 ATP synthase subunit C	F: ATP-synt_C	ECOD (1.6)
Y [auth i]	ATP-synt_C	e7tmsi2	A: extended segments	X: F1F0 ATP synthase subunit C (From Topology)	H: F1F0 ATP synthase subunit C (From Topology)	T: F1F0 ATP synthase subunit C	F: ATP-synt_C	ECOD (1.6)
W [auth g]	ATP-synt_C	e7tmsg2	A: extended segments	X: F1F0 ATP synthase subunit C (From Topology)	H: F1F0 ATP synthase subunit C (From Topology)	T: F1F0 ATP synthase subunit C	F: ATP-synt_C	ECOD (1.6)
DA [auth n]	ATP-synt_C	e7tmsn2	A: extended segments	X: F1F0 ATP synthase subunit C (From Topology)	H: F1F0 ATP synthase subunit C (From Topology)	T: F1F0 ATP synthase subunit C	F: ATP-synt_C	ECOD (1.6)
CA [auth m]	ATP-synt_C	e7tmsm1	A: extended segments	X: F1F0 ATP synthase subunit C (From Topology)	H: F1F0 ATP synthase subunit C (From Topology)	T: F1F0 ATP synthase subunit C	F: ATP-synt_C	ECOD (1.6)
BA [auth l]	ATP-synt_C	e7tmsl2	A: extended segments	X: F1F0 ATP synthase subunit C (From Topology)	H: F1F0 ATP synthase subunit C (From Topology)	T: F1F0 ATP synthase subunit C	F: ATP-synt_C	ECOD (1.6)
AA [auth k]	ATP-synt_C	e7tmsk2	A: extended segments	X: F1F0 ATP synthase subunit C (From Topology)	H: F1F0 ATP synthase subunit C (From Topology)	T: F1F0 ATP synthase subunit C	F: ATP-synt_C	ECOD (1.6)
T [auth d]	vATP-synt_AC39_3rd	e7tmsd1	A: alpha bundles	X: V-type ATP synthase subunit C	H: V-type ATP synthase subunit C (From Topology)	T: V-type ATP synthase subunit C	F: vATP-synt_AC39_3rd	ECOD (1.6)
T [auth d]	vATP-synt_AC39_1st	e7tmsd2	A: alpha bundles	X: V-type ATP synthase subunit C	H: V-type ATP synthase subunit C (From Topology)	T: V-type ATP synthase subunit C	F: vATP-synt_AC39_1st	ECOD (1.6)
E	ATP-synt_ab_N	e7tmsE3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: ATP-synt_ab_N	ECOD (1.6)
E	ATP-synt_ab_C	e7tmsE2	A: alpha superhelices	X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)	H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)	T: C-terminal domain of alpha and beta subunits of F1 ATP synthase	F: ATP-synt_ab_C	ECOD (1.6)
E	ATP-synt_ab_Xtn	e7tmsE1	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: ATP-synt_ab_Xtn	ECOD (1.6)
E	ATP-synt_ab	e7tmsE4	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: ATP-synt_ab	ECOD (1.6)
C	ATP-synt_ab_N	e7tmsC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: ATP-synt_ab_N	ECOD (1.6)
C	ATP-synt_ab_C	e7tmsC3	A: alpha superhelices	X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)	H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)	T: C-terminal domain of alpha and beta subunits of F1 ATP synthase	F: ATP-synt_ab_C	ECOD (1.6)
C	ATP-synt_ab_Xtn	e7tmsC4	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: ATP-synt_ab_Xtn	ECOD (1.6)
C	ATP-synt_ab	e7tmsC2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: ATP-synt_ab	ECOD (1.6)
A	ATP-synt_ab_N	e7tmsA2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: ATP-synt_ab_N	ECOD (1.6)
A	ATP-synt_ab_C	e7tmsA1	A: alpha superhelices	X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)	H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)	T: C-terminal domain of alpha and beta subunits of F1 ATP synthase	F: ATP-synt_ab_C	ECOD (1.6)
A	ATP-synt_ab_Xtn	e7tmsA3	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: ATP-synt_ab_Xtn	ECOD (1.6)
A	ATP-synt_ab	e7tmsA4	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: ATP-synt_ab	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
P	PF11698	V-ATPase subunit H (V-ATPase_H_C)	V-ATPase subunit H	-	Repeat
P	PF03224	V-ATPase subunit H (V-ATPase_H_N)	V-ATPase subunit H	-	Repeat
O	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain
N	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain
M	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain
H, J, L	PF03179	Vacuolar (H+)-ATPase G subunit (V-ATPase_G)	Vacuolar (H+)-ATPase G subunit	-	Coiled-coil
H, J, L	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain
G, I, K	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain
B, D, F	PF20520	V0 complex accessory subunit Ac45/VOA1 transmembrane domain (Ac45-VOA1_TM)	V0 complex accessory subunit Ac45/VOA1 transmembrane domain	This entry represents the transmembrane domain from ER/Golgi membrane proteins including V0 complex accessory subunit Ac45 (ATP6AP1, also known as V-type proton ATPase subunit S1) from animals and the yeast homologue V0 assembly protein 1 (VOA1) whic ...	This entry represents the transmembrane domain from ER/Golgi membrane proteins including V0 complex accessory subunit Ac45 (ATP6AP1, also known as V-type proton ATPase subunit S1) from animals and the yeast homologue V0 assembly protein 1 (VOA1) which are essential for V0 ATPase assembly, stability and function [1,2]. In humans, mutations of ATP6AP1 cause immunodeficiency with hypogammaglobulinemia, hepatopathy and neurocognitive abnormalities [3]. This entry also includes ER membrane BIG1 proteins from yeast, involved in cell wall biogenesis.	Domain
B, D, F	PF01992	ATP synthase (C/AC39) subunit (vATP-synt_AC39)	ATP synthase (C/AC39) subunit	-	Family
A, C, E	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)	ATP synthase alpha/beta family, nucleotide-binding domain	This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.	Domain
A, C, E	PF05493	ATP synthase subunit H (ATP_synt_H)	ATP synthase subunit H	-	Family
A, C, E	PF22919	C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)	C-terminal domain of V and A type ATP synthase	This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases.	Domain
A, C, E	PF16886	ATPsynthase alpha/beta subunit barrel-sandwich domain (ATP-synt_ab_Xtn)	ATPsynthase alpha/beta subunit barrel-sandwich domain	This barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel ...	This barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel-sandwich domain the C-terminal strand is circularly permuted and occupies the spatial position of the N-terminal strand in other hybrid domains.	Domain
A, C, E	PF01496	V-type ATPase 116kDa subunit family (V_ATPase_I)	V-type ATPase 116kDa subunit family	-	Family
A, C, E	PF02874	ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)	ATP synthase alpha/beta family, beta-barrel domain	This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.	Domain
A, C, E	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
Q [auth a]	IPR026028	ATPase, V0 complex, subunit 116kDa, eukaryotic	Family
Q [auth a]	IPR002490	V-type ATPase, V0 complex, 116kDa subunit family	Family
P	IPR004908	ATPase, V1 complex, subunit H	Family
P	IPR016024	Armadillo-type fold	Homologous Superfamily
P	IPR011989	Armadillo-like helical	Homologous Superfamily
P	IPR038497	ATPase, V1 complex, subunit H, C-terminal domain superfamily	Homologous Superfamily
P	IPR011987	ATPase, V1 complex, subunit H, C-terminal	Domain
H, J, L	IPR005124	Vacuolar (H+)-ATPase G subunit	Family
EA [auth o]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
EA [auth o]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain
EA [auth o]	IPR011555	V-ATPase proteolipid subunit C, eukaryotic	Family
EA [auth o]	IPR000245	V-ATPase proteolipid subunit	Family
AA [auth k], BA [auth l], CA [auth m], DA [auth n], W [auth g], AA [auth k], BA [auth l], CA [auth m], DA [auth n], W [auth g], X [auth h], Y [auth i], Z [auth j]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
AA [auth k], BA [auth l], CA [auth m], DA [auth n], W [auth g], AA [auth k], BA [auth l], CA [auth m], DA [auth n], W [auth g], X [auth h], Y [auth i], Z [auth j]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain
AA [auth k], BA [auth l], CA [auth m], DA [auth n], W [auth g], AA [auth k], BA [auth l], CA [auth m], DA [auth n], W [auth g], X [auth h], Y [auth i], Z [auth j]	IPR011555	V-ATPase proteolipid subunit C, eukaryotic	Family
AA [auth k], BA [auth l], CA [auth m], DA [auth n], W [auth g], AA [auth k], BA [auth l], CA [auth m], DA [auth n], W [auth g], X [auth h], Y [auth i], Z [auth j]	IPR000245	V-ATPase proteolipid subunit	Family
V [auth f]	IPR056552	Ribonuclease kappa-like	Family
V [auth f]	IPR026770	Ribonuclease kappa	Family
U [auth e]	IPR008389	ATPase, V0 complex, subunit e1/e2	Family
T [auth d]	IPR044911	V-type ATP synthase C/D subunit, domain 3 superfamily	Homologous Superfamily
T [auth d]	IPR002843	ATPase, V0 complex, C/D subunit	Family
T [auth d]	IPR036079	V-type ATP synthase subunit C/D subunit superfamily	Homologous Superfamily
T [auth d]	IPR035067	V-type ATPase subunit C/D	Homologous Superfamily
T [auth d]	IPR016727	ATPase, V0 complex, subunit D	Family
S [auth c]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
S [auth c]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain
S [auth c]	IPR000245	V-ATPase proteolipid subunit	Family
R [auth b]	IPR046756	V-type proton ATPase subunit S1/VOA1, transmembrane domain	Domain
A, C, E	IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Domain
A, C, E	IPR022878	V-type ATP synthase catalytic alpha chain	Family
A, C, E	IPR024034	ATPase, F1/V1 complex, beta/alpha subunit, C-terminal	Homologous Superfamily
A, C, E	IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Homologous Superfamily
A, C, E	IPR031686	ATPsynthase alpha/beta subunit, barrel-sandwich domain	Domain
A, C, E	IPR023366	ATP synthase subunit alpha, N-terminal domain-like superfamily	Homologous Superfamily
A, C, E	IPR020003	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Active Site
A, C, E	IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Domain
A, C, E	IPR055190	ATP synthase A/B type, C-terminal domain	Domain
A, C, E	IPR005725	ATPase, V1 complex, subunit A	Family
A, C, E	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, AA [auth k], BA [auth l], C, CA [auth m] A, AA [auth k], BA [auth l], C, CA [auth m], DA [auth n], E, EA [auth o], H, J, L, P, Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e], V [auth f], W [auth g], X [auth h], Y [auth i], Z [auth j]	OPM	Transmembrane	Alpha-helical polytopic	Proton or Sodium translocating F-type, V-type and A-type ATPases	V-type and F-type ATPases