7TBL

Composite structure of the human nuclear pore complex (NPC) cytoplasmic face generated with a 12A cryo-ET map of the purified HeLa cell NPC

External Resource: Annotation

Domain Annotation: ECOD Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth A1]	PF08801	e7tblA12	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
C [auth A3]	PF08801	e7tblA32	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
MA [auth I1]	PF11894	e7tblI12	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
OA [auth I3]	PF11894	e7tblI32	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
PA [auth I4]	PF11894	e7tblI42	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
NA [auth I2]	PF11894	e7tblI22	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
QA [auth I5]	PF11894	e7tblI52	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF11894	ECOD (1.6)
TB [auth P2]	F_UNCLASSIFIED	e7tblP21	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: F_UNCLASSIFIED	ECOD (1.6)
UB [auth P3]	F_UNCLASSIFIED	e7tblP31	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: F_UNCLASSIFIED	ECOD (1.6)
VB [auth P4]	F_UNCLASSIFIED	e7tblP41	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: F_UNCLASSIFIED	ECOD (1.6)
SB [auth P1]	F_UNCLASSIFIED	e7tblP11	A: a+b two layers	X: Alpha-beta plaits	H: Nup54 ferredoxin-like domain (From Topology)	T: Nup54 ferredoxin-like domain	F: F_UNCLASSIFIED	ECOD (1.6)
WB [auth Q1]	PF05172	e7tblQ11	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF05172	ECOD (1.6)
XB [auth Q2]	PF05172	e7tblQ21	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF05172	ECOD (1.6)
YB [auth Q3]	PF05172	e7tblQ31	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF05172	ECOD (1.6)
ZB [auth Q4]	PF05172	e7tblQ41	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF05172	ECOD (1.6)
B [auth A2]	PF08801	e7tblA22	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
D [auth A4]	PF08801	e7tblA42	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
GC [auth S3]	F_UNCLASSIFIED	e7tblS32	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
GC [auth S3]	PF03177	e7tblS31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
HC [auth S4]	F_UNCLASSIFIED	e7tblS42	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
HC [auth S4]	PF03177	e7tblS41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
EC [auth S1]	F_UNCLASSIFIED	e7tblS12	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
EC [auth S1]	PF03177	e7tblS11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
FC [auth S2]	F_UNCLASSIFIED	e7tblS22	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
FC [auth S2]	PF03177	e7tblS21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
IC [auth T1]	PF04121	e7tblT11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
JC [auth T2]	PF04121	e7tblT21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
KC [auth T3]	PF04121	e7tblT31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
LC [auth T4]	PF04121	e7tblT41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
MC [auth U1]	PF04121	e7tblU11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
NC [auth U2]	PF04121	e7tblU21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
PC [auth U4]	PF04121	e7tblU41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
OC [auth U3]	PF04121	e7tblU31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin Nup84/Nup107 (From Topology)	T: Nucleoporin Nup84/Nup107	F: PF04121	ECOD (1.6)
QC [auth V1]	PF12110	e7tblV11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF12110	ECOD (1.6)
RC [auth V2]	PF12110	e7tblV21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF12110	ECOD (1.6)
TC [auth V4]	PF12110	e7tblV41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF12110	ECOD (1.6)
SC [auth V3]	PF12110	e7tblV31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF12110	ECOD (1.6)
VC [auth W2]	PF00400	e7tblW21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
UC [auth W1]	PF00400	e7tblW11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
WC [auth W3]	PF00400	e7tblW31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
XC [auth W4]	PF00400	e7tblW41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
BD [auth X4]	PF07575	e7tblX41	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF07575	ECOD (1.6)
YC [auth X1]	PF07575	e7tblX11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF07575	ECOD (1.6)
AD [auth X3]	PF07575	e7tblX31	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF07575	ECOD (1.6)
ZC [auth X2]	PF07575	e7tblX21	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)	T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain	F: PF07575	ECOD (1.6)
FD [auth Y4]	PF00400	e7tblY41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
CD [auth Y1]	PF00400	e7tblY11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
DD [auth Y2]	PF00400	e7tblY21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
ED [auth Y3]	PF00400	e7tblY31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
GD [auth Z1]	PF11715	e7tblZ12	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF11715	ECOD (1.6)
GD [auth Z1]	PF22114	e7tblZ13	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: PF22114	ECOD (1.6)
GD [auth Z1]	F_UNCLASSIFIED	e7tblZ11	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: F_UNCLASSIFIED	ECOD (1.6)
HD [auth Z2]	PF11715	e7tblZ22	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF11715	ECOD (1.6)
HD [auth Z2]	PF22114	e7tblZ21	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: PF22114	ECOD (1.6)
HD [auth Z2]	F_UNCLASSIFIED	e7tblZ23	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: F_UNCLASSIFIED	ECOD (1.6)
ID [auth Z3]	PF11715	e7tblZ32	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF11715	ECOD (1.6)
ID [auth Z3]	PF22114	e7tblZ31	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: PF22114	ECOD (1.6)
ID [auth Z3]	F_UNCLASSIFIED	e7tblZ33	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: F_UNCLASSIFIED	ECOD (1.6)
JD [auth Z4]	PF11715	e7tblZ43	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF11715	ECOD (1.6)
JD [auth Z4]	PF22114	e7tblZ41	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: PF22114	ECOD (1.6)
JD [auth Z4]	F_UNCLASSIFIED	e7tblZ42	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: F_UNCLASSIFIED	ECOD (1.6)
KD [auth a1]	PF00400	e7tbla11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
LD [auth a2]	PF00400	e7tbla21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
ND [auth a4]	PF00400	e7tbla41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
MD [auth a3]	PF00400	e7tbla31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
E [auth A5]	PF08801	e7tblA52	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
F [auth A6]	PF08801	e7tblA62	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
OD [auth b1]	F_UNCLASSIFIED	e7tblb11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
PD [auth b2]	F_UNCLASSIFIED	e7tblb21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
QD [auth b3]	F_UNCLASSIFIED	e7tblb31	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
RD [auth b4]	F_UNCLASSIFIED	e7tblb41	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: F_UNCLASSIFIED	ECOD (1.6)
XD [auth d1]	PF16687	e7tbld11	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF16687	ECOD (1.6)
YD [auth d2]	PF16687	e7tbld21	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF16687	ECOD (1.6)
ZD [auth e]	PF07817	e7tble1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF07817	ECOD (1.6)
BE [auth g]	PF12894	e7tblg1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF12894	ECOD (1.6)
CE [auth h]	PF00270	e7tblh1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00270	ECOD (1.6)
DE [auth i]	PF10168	e7tbli1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF10168	ECOD (1.6)
EE [auth j]	PF04096	e7tblj1	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: ZU5/Nup98-C/GAIN-B autoproteolytic domain-related (From Topology)	T: ZU5/Nup98-C/GAIN-B autoproteolytic domain-related	F: PF04096	ECOD (1.6)
T [auth D2]	PF04097	e7tblD21	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
U [auth D3]	PF04097	e7tblD31	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
X [auth D6]	PF04097	e7tblD61	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
Y [auth D7]	PF04097	e7tblD71	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
S [auth D1]	PF04097	e7tblD11	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
V [auth D4]	PF04097	e7tblD41	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)
W [auth D5]	PF04097	e7tblD51	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF04097	ECOD (1.6)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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7TBL

Composite structure of the human nuclear pore complex (NPC) cytoplasmic face generated with a 12A cryo-ET map of the purified HeLa cell NPC

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage