7SVP | pdb_00007svp

Structure of compound 34 bound to human Phospholipase D2 catalytic domain

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth C], B [auth A], C [auth B], D	PF13091	PLD-like domain (PLDc_2)	PLD-like domain		Domain
A [auth C], B [auth A], C [auth B], D	PF00614	Phospholipase D Active site motif (PLDc)	Phospholipase D Active site motif	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], B [auth A], C [auth B], D	Phospholipase D2	binding phospholipid binding lipid binding phosphatidylinositol binding phosphoric ester hydrolase activity phospholipase activity hydrolase activity, acting on ester bonds phosphoric diester hydrolase activity glycerophospholipase activity hydrolase activity catalytic activity D-type glycerophospholipase activity lipase activity	cellular component organization organelle organization cellular process cellular component organization or biogenesis cytoskeleton organization phosphatidic acid biosynthetic process glycerophospholipid biosynthetic process phosphatidic acid metabolic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process cellular component organization organelle organization cellular process cellular component organization or biogenesis cytoskeleton organization phosphatidic acid biosynthetic process glycerophospholipid biosynthetic process phosphatidic acid metabolic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process glycerolipid metabolic process metabolic process phosphorus metabolic process lipid metabolic process synaptic vesicle recycling localization cellular localization transport establishment of localization in cell synaptic vesicle cycle establishment of localization vesicle-mediated transport vesicle-mediated transport in synapse lipid catabolic process catabolic process phospholipid catabolic process organophosphate catabolic process cellular response to stimulus import into cell immune response-regulating cell surface receptor signaling pathway regulation of cellular process response to stimulus signaling positive regulation of biological process Fc-gamma receptor signaling pathway involved in phagocytosis cell communication positive regulation of response to stimulus immune response-activating signaling pathway Fc receptor signaling pathway immune response-regulating signaling pathway positive regulation of immune response phagocytosis regulation of immune system process signal transduction Fc-gamma receptor signaling pathway positive regulation of immune system process regulation of biological process cell surface receptor signaling pathway immune response immune response-activating cell surface receptor signaling pathway biological regulation Fc receptor mediated stimulatory signaling pathway regulation of response to stimulus immune system process regulation of immune response endocytosis activation of immune response small GTPase-mediated signal transduction intracellular signal transduction intracellular signaling cassette negative adaptation of signaling pathway receptor internalization negative regulation of signaling negative regulation of biological process desensitization of G protein-coupled receptor signaling pathway regulation of signal transduction negative regulation of G protein-coupled receptor signaling pathway negative regulation of cell communication negative regulation of cellular process regulation of G protein-coupled receptor signaling pathway G protein-coupled receptor internalization regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction adaptation of signaling pathway regulation of cell communication G protein-coupled receptor signaling pathway receptor-mediated endocytosis regulation of localization regulation of transport regulation of vesicle-mediated transport	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle brush border membrane membrane plasma membrane cluster of actin-based cell projections membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle brush border membrane membrane plasma membrane cluster of actin-based cell projections plasma membrane bounded cell projection brush border cell periphery cell projection apical part of cell plasma membrane region apical plasma membrane cell projection membrane presynapse synapse cell junction organelle subcompartment endomembrane system endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], B [auth A], C [auth B], D	IPR015679	Phospholipase D family	Family
A [auth C], B [auth A], C [auth B], D	IPR001849	Pleckstrin homology domain	Domain
A [auth C], B [auth A], C [auth B], D	IPR001683	Phox homology	Domain
A [auth C], B [auth A], C [auth B], D	IPR001736	Phospholipase D/Transphosphatidylase	Domain
A [auth C], B [auth A], C [auth B], D	IPR036871	PX domain superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth B], D	IPR011993	PH-like domain superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth B], D	IPR025202	Cardiolipin synthase-like, phospholipase D-like domain	Domain
A [auth C], B [auth A], C [auth B], D	IPR016555	Phospholipase D, eukaryotic type	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth C], B [auth A], C [auth B], D	Pharos: O14939	Cardiomegaly attention deficit hyperactivity disorder, inattentive type swine influenza brain aneurysm systemic lupus erythematosus

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.