5-HT2B receptor bound to LSD in complex with beta-arrestin1 obtained by cryo-electron microscopy (cryoEM)
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: mpstruc
- Protein Modification Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C [auth R] | SCOP2B Superfamily | G protein-coupled receptor-like | 8091214 | 3000473 | SCOP2B (2022-06-29) |
| C [auth R] | SCOP2B Superfamily | G protein-coupled receptor-like | 8091214 | 3000473 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth P] | V-set | e7srsP1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
| B [auth Q] | V-set_8 | e7srsQ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
| C [auth R] | 7tm_1_2 | e7srsR1 | A: alpha bundles | X: Family A G protein-coupled receptor-like (From Topology) | H: Family A G protein-coupled receptor-like (From Topology) | T: Family A G protein-coupled receptor-like | F: 7tm_1_2 | ECOD (1.6) |
| D [auth C] | Arrestin_C | e7srsC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Arrestin_C | ECOD (1.6) |
| D [auth C] | Arrestin_N | e7srsC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Arrestin_N | ECOD (1.6) |
| E [auth H] | V-set_10 | e7srsH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_10 | ECOD (1.6) |
| F [auth L] | V-set | e7srsL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A [auth P] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| B [auth Q] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| C [auth R] | 1.20.1070.10 | Mainly Alpha | Up-down Bundle | Rhopdopsin 7-helix transmembrane proteins | Rhodopsin 7-helix transmembrane proteins | CATH (utative) |
| D [auth C] | 2.60.40.840 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (utative) | |
| D [auth C] | 2.60.40.640 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (utative) | |
| E [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| F [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| A [auth P] | Light Chain | IGKV4 | Kappa | 5-hydroxytryptamine receptor 2b | SAbDab (2025-12-12) |
| B [auth Q] | Heavy Chain | IGHV1 | - | 5-hydroxytryptamine receptor 2b | SAbDab (2025-12-12) |
| E [auth H] | Heavy Chain | IGHV3 | - | isoform 1b of beta-arrestin-1 | SAbDab (2025-12-12) |
| F [auth L] | Light Chain | IGKV1 | Kappa | isoform 1b of beta-arrestin-1 | SAbDab (2025-12-12) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| C [auth R] | PF00001 | 7 transmembrane receptor (rhodopsin family) (7tm_1) | 7 transmembrane receptor (rhodopsin family) | This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GC ... | Domain |
| D [auth C] | PF00339 | Arrestin (or S-antigen), N-terminal domain (Arrestin_N) | Arrestin (or S-antigen), N-terminal domain | Ig-like beta-sandwich fold. Scop reports duplication with C-terminal domain. | Domain |
| D [auth C] | PF02752 | Arrestin (or S-antigen), C-terminal domain (Arrestin_C) | Arrestin (or S-antigen), C-terminal domain | Ig-like beta-sandwich fold. Scop reports duplication with N-terminal domain. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| C [auth R] | IPR000276 | G protein-coupled receptor, rhodopsin-like | Family |
| C [auth R] | IPR017452 | GPCR, rhodopsin-like, 7TM | Domain |
| C [auth R] | IPR000482 | 5-Hydroxytryptamine 2B receptor | Family |
| C [auth R] | IPR002231 | 5-hydroxytryptamine receptor family | Family |
| D [auth C] | IPR000698 | Arrestin | Family |
| D [auth C] | IPR014753 | Arrestin, N-terminal | Homologous Superfamily |
| D [auth C] | IPR014756 | Immunoglobulin E-set | Homologous Superfamily |
| D [auth C] | IPR011021 | Arrestin-like, N-terminal | Domain |
| D [auth C] | IPR014752 | Arrestin-like, C-terminal | Homologous Superfamily |
| D [auth C] | IPR017864 | Arrestin, conserved site | Conserved Site |
| D [auth C] | IPR011022 | Arrestin C-terminal-like domain | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Rhodopsin-like receptors and pumps | G-protein coupled receptors, family A |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | G Protein-Coupled Receptors: Class A | 5-HT2B serotonin receptor - β arrestin-1 complex with bound LSD |
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| C [auth R] | SEP | Parent Component: SER :  AA0037 :  O-phospho-L-serine MOD:00046 |














