7SP4 | pdb_00007sp4

In situ cryo-EM structure of bacteriophage Sf6 gp3:gp7:gp5 complex in conformation 2 at 3.71A resolution

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth x]	AAA_lid_RFC1	e7sp4x1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
YA [auth w]	AAA_lid_RFC1	e7sp4w1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
XA [auth v]	AAA_lid_RFC1	e7sp4v1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
WA [auth u]	AAA_lid_RFC1	e7sp4u1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
UA [auth s]	AAA_lid_RFC1	e7sp4s1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
TA [auth r]	AAA_lid_RFC1	e7sp4r1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
OA [auth m]	AAA_lid_RFC1	e7sp4m1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
JA [auth h]	AAA_lid_RFC1	e7sp4h1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
EA [auth c]	AAA_lid_RFC1	e7sp4c1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
BB [auth z]	AAA_lid_RFC1	e7sp4z1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
B [auth 1]	AAA_lid_RFC1	e7sp411	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
A [auth 0]	AAA_lid_RFC1	e7sp401	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
N [auth L]	AAA_lid_RFC1	e7sp4L1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
M [auth K]	AAA_lid_RFC1	e7sp4K1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
L [auth J]	AAA_lid_RFC1	e7sp4J1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
K [auth I]	AAA_lid_RFC1	e7sp4I1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
J [auth H]	AAA_lid_RFC1	e7sp4H1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
I [auth G]	AAA_lid_RFC1	e7sp4G1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
H [auth F]	AAA_lid_RFC1	e7sp4F1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
G [auth E]	AAA_lid_RFC1	e7sp4E1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
F [auth D]	AAA_lid_RFC1	e7sp4D1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
E [auth C]	AAA_lid_RFC1	e7sp4C1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
D [auth B]	AAA_lid_RFC1	e7sp4B1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
C [auth A]	AAA_lid_RFC1	e7sp4A1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
Z [auth X]	COQ9	e7sp4X1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
Y [auth W]	COQ9	e7sp4W1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
X [auth V]	COQ9	e7sp4V1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
W [auth U]	COQ9	e7sp4U1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
VA [auth t]	COQ9	e7sp4t1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
V [auth T]	COQ9	e7sp4T1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
U [auth S]	COQ9	e7sp4S1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
T [auth R]	COQ9	e7sp4R1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
SA [auth q]	COQ9	e7sp4q1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
S [auth Q]	COQ9	e7sp4Q1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
RA [auth p]	COQ9	e7sp4p1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
R [auth P]	COQ9	e7sp4P1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
QA [auth o]	COQ9	e7sp4o1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
Q [auth O]	COQ9	e7sp4O1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
PA [auth n]	COQ9	e7sp4n1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
P [auth N]	COQ9	e7sp4N1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
O [auth M]	COQ9	e7sp4M1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
NA [auth l]	COQ9	e7sp4l1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
MA [auth k]	COQ9	e7sp4k1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
LA [auth j]	COQ9	e7sp4j1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
KA [auth i]	COQ9	e7sp4i1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
IA [auth g]	COQ9	e7sp4g1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
HA [auth f]	COQ9	e7sp4f1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
GA [auth e]	COQ9	e7sp4e1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
FA [auth d]	COQ9	e7sp4d1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
DA [auth b]	COQ9	e7sp4b1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
CA [auth a]	COQ9	e7sp4a1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
BA [auth Z]	COQ9	e7sp4Z1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
AB [auth y]	COQ9	e7sp4y1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)
AA [auth Y]	COQ9	e7sp4Y1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	PF16510	Phage P22-like portal protein (P22_portal)	Phage P22-like portal protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 0], B [auth 1], BB [auth z], EA [auth c], JA [auth h], A [auth 0], B [auth 1], BB [auth z], EA [auth c], JA [auth h], OA [auth m], TA [auth r], UA [auth s], WA [auth u], XA [auth v], YA [auth w], ZA [auth x]	Gene 7 protein	cation binding ion binding binding metal ion binding small molecule binding	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	-
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	Gene 3 protein	-	-	-
AA [auth Y], AB [auth y], BA [auth Z], CA [auth a], DA [auth b], AA [auth Y], AB [auth y], BA [auth Z], CA [auth a], DA [auth b], FA [auth d], GA [auth e], HA [auth f], IA [auth g], KA [auth i], LA [auth j], MA [auth k], NA [auth l], O [auth M], P [auth N], PA [auth n], Q [auth O], QA [auth o], R [auth P], RA [auth p], S [auth Q], SA [auth q], T [auth R], U [auth S], V [auth T], VA [auth t], W [auth U], X [auth V], Y [auth W], Z [auth X]	Gene 5 protein	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 0], B [auth 1], BB [auth z], EA [auth c], JA [auth h], A [auth 0], B [auth 1], BB [auth z], EA [auth c], JA [auth h], OA [auth m], TA [auth r], UA [auth s], WA [auth u], XA [auth v], YA [auth w], ZA [auth x]	IPR038258	Peptidoglycan hydrolase Gp4 superfamily	Homologous Superfamily
A [auth 0], B [auth 1], BB [auth z], EA [auth c], JA [auth h], A [auth 0], B [auth 1], BB [auth z], EA [auth c], JA [auth h], OA [auth m], TA [auth r], UA [auth s], WA [auth u], XA [auth v], YA [auth w], ZA [auth x]	IPR020362	Tail accessory factor GP4	Family
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	IPR032427	Phage P22-like portal protein	Family
AA [auth Y], AB [auth y], BA [auth Z], CA [auth a], DA [auth b], AA [auth Y], AB [auth y], BA [auth Z], CA [auth a], DA [auth b], FA [auth d], GA [auth e], HA [auth f], IA [auth g], KA [auth i], LA [auth j], MA [auth k], NA [auth l], O [auth M], P [auth N], PA [auth n], Q [auth O], QA [auth o], R [auth P], RA [auth p], S [auth Q], SA [auth q], T [auth R], U [auth S], V [auth T], VA [auth t], W [auth U], X [auth V], Y [auth W], Z [auth X]	IPR024659	Major capsid protein Gp5	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.