Neoantigen p53R175H-specific TCR 6-11 binds to p53R175H-HLA-A2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
QSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054579 3000071 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyMHC antigen-recognition domain 8033653 3000521 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054579 3000071 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyMHC antigen-recognition domain 8033653 3000521 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyMHC antigen-recognition domain 8033653 3000521 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054579 3000071 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMHC antigen-recognition domain 8033653 3000521 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054579 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
TAPHe7rm4T1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: APHECOD (v294.1)
OAPHe7rm4O1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: APHECOD (v294.1)
JAPHe7rm4J1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: APHECOD (v294.1)
EGST_Ce7rm4E1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: GST_CECOD (v294.1)
SAPHe7rm4S1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: APHECOD (v294.1)
NAPHe7rm4N1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: APHECOD (v294.1)
IAPHe7rm4I1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: APHECOD (v294.1)
DGST_Ce7rm4D1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: GST_CECOD (v294.1)
QAPHe7rm4Q1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: APHECOD (v294.1)
LAPHe7rm4L1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: APHECOD (v294.1)
GAPHe7rm4G1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: APHECOD (v294.1)
BGST_Ce7rm4B1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: GST_CECOD (v294.1)
PAPHe7rm4P1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: APHECOD (v294.1)
KAPHe7rm4K1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: APHECOD (v294.1)
FAPHe7rm4F1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: APHECOD (v294.1)
AGST_Ce7rm4A1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: GST_CECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, G, L, Q
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
A, F, K, P
PF00129Class I Histocompatibility antigen, domains alpha 1 and 2 (MHC_I)Class I Histocompatibility antigen, domains alpha 1 and 2Domain
A, F, K, P
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E, J, O, T
6-11 T cell receptor alpha chain---
D, I, N, S
6-11 T cell receptor beta chain---
C, H, M, R
Cellular tumor antigen p53 peptide
B, G, L, Q
Beta-2-microglobulin
A, F, K, P
HLA class I histocompatibility antigen, A alpha chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C, H, M, R
IPR012346p53/RUNT-type transcription factor, DNA-binding domain superfamilyHomologous Superfamily
C, H, M, R
IPR057064p53, central conserved siteConserved Site
C, H, M, R
IPR002117p53 tumour suppressor familyFamily
C, H, M, R
IPR036674p53-like tetramerisation domain superfamilyHomologous Superfamily
C, H, M, R
IPR011615p53, DNA-binding domainDomain
C, H, M, R
IPR013872p53, transactivation domainDomain
C, H, M, R
IPR008967p53-like transcription factor, DNA-binding domain superfamilyHomologous Superfamily
C, H, M, R
IPR010991p53, tetramerisation domainDomain
C, H, M, R
IPR040926Cellular tumor antigen p53, transactivation domain 2Domain
B, G, L, Q
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
B, G, L, Q
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
B, G, L, Q
IPR013783Immunoglobulin-like foldHomologous Superfamily
B, G, L, Q
IPR007110Immunoglobulin-like domainDomain
B, G, L, Q
IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
B, G, L, Q
IPR003597Immunoglobulin C1-setDomain
B, G, L, Q
IPR015707Beta-2-MicroglobulinFamily
A, F, K, P
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A, F, K, P
IPR010579MHC class I, alpha chain, C-terminalDomain
A, F, K, P
IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
A, F, K, P
IPR001039MHC class I alpha chain, alpha1 alpha2 domainsDomain
A, F, K, P
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
A, F, K, P
IPR013783Immunoglobulin-like foldHomologous Superfamily
A, F, K, P
IPR007110Immunoglobulin-like domainDomain
A, F, K, P
IPR050208Antigen-presenting and immune regulatory MHC class I-relatedFamily
A, F, K, P
IPR003597Immunoglobulin C1-setDomain
A, F, K, P
IPR011161MHC class I-like antigen recognition-likeDomain
A, F, K, P
IPR037055MHC class I-like antigen recognition-like superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
C, H, M, R
P04637
B, G, L, Q
P61769
A, F, K, P
P04439