7RLJ | pdb_00007rlj

Cryo-EM structure of human p97 bound to CB-5083 and ATPgS.


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
L [auth K]Glyco_transf_41e7rljK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
K [auth J]Glyco_transf_41e7rljJ1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
J [auth I]Glyco_transf_41e7rljI1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
I [auth H]Glyco_transf_41e7rljH1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
H [auth G]Glyco_transf_41e7rljG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
G [auth L]Glyco_transf_41e7rljL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
FGlyco_transf_41e7rljF1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
EGlyco_transf_41e7rljE1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
DGlyco_transf_41e7rljD1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
CGlyco_transf_41e7rljC1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
BGlyco_transf_41e7rljB1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
AGlyco_transf_41e7rljA1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
L [auth K]2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (utative)
L [auth K]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
L [auth K]1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
L [auth K]6.10.20.150 Special Helix non-globular Arc Repressor Mutant, subunit A CATH (utative)
K [auth J]2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (utative)
K [auth J]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
K [auth J]1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
K [auth J]6.10.20.150 Special Helix non-globular Arc Repressor Mutant, subunit A CATH (utative)
J [auth I]2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (utative)
J [auth I]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
J [auth I]1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
J [auth I]6.10.20.150 Special Helix non-globular Arc Repressor Mutant, subunit A CATH (utative)
I [auth H]2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (utative)
I [auth H]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
I [auth H]1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
I [auth H]6.10.20.150 Special Helix non-globular Arc Repressor Mutant, subunit A CATH (utative)
H [auth G]2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (utative)
H [auth G]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
H [auth G]1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
H [auth G]6.10.20.150 Special Helix non-globular Arc Repressor Mutant, subunit A CATH (utative)
G [auth L]2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (utative)
G [auth L]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
G [auth L]1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
G [auth L]6.10.20.150 Special Helix non-globular Arc Repressor Mutant, subunit A CATH (utative)
F2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (utative)
F3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
F1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
F6.10.20.150 Special Helix non-globular Arc Repressor Mutant, subunit A CATH (utative)
E2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (utative)
E3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
E1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
E6.10.20.150 Special Helix non-globular Arc Repressor Mutant, subunit A CATH (utative)
D2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (utative)
D3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
D1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
D6.10.20.150 Special Helix non-globular Arc Repressor Mutant, subunit A CATH (utative)
C2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (utative)
C3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
C1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
C6.10.20.150 Special Helix non-globular Arc Repressor Mutant, subunit A CATH (utative)
B2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (utative)
B3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
B1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
B6.10.20.150 Special Helix non-globular Arc Repressor Mutant, subunit A CATH (utative)
A2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (utative)
A3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
A1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
A6.10.20.150 Special Helix non-globular Arc Repressor Mutant, subunit A CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
B,
C,
D,
E,
PF02933Cell division protein 48 (CDC48), domain 2 (CDC48_2)Cell division protein 48 (CDC48), domain 2This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain
A,
B,
C,
D,
E,
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
A,
B,
C,
D,
E,
PF02359Cell division protein 48 (CDC48), N-terminal domain (CDC48_N)Cell division protein 48 (CDC48), N-terminal domainThis domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain
A,
B,
C,
D,
E,
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
B,
C,
D,
E,
Transitional endoplasmic reticulum ATPase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
B,
C,
D,
E,
IPR003959ATPase, AAA-type, coreDomain
A,
B,
C,
D,
E,
IPR005938AAA ATPase, CDC48 familyFamily
A,
B,
C,
D,
E,
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A,
B,
C,
D,
E,
IPR029067CDC48 domain 2-like superfamilyHomologous Superfamily
A,
B,
C,
D,
E,
IPR003338CDC48, N-terminal subdomainDomain
A,
B,
C,
D,
E,
IPR004201CDC48, domain 2Domain
A,
B,
C,
D,
E,
IPR009010Aspartate decarboxylase-like domain superfamilyHomologous Superfamily
A,
B,
C,
D,
E,
IPR003593AAA+ ATPase domainDomain
A,
B,
C,
D,
E,
IPR041569AAA ATPase, AAA+ lid domainDomain
A,
B,
C,
D,
E,
IPR050168AAA ATPase domain-containing proteinFamily
A,
B,
C,
D,
E,
IPR003960ATPase, AAA-type, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A,
B,
C,
D,
E,
PharosP55072