Cryo-EM structure of human p97 bound to CB-5083 and ATPgS.
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| L [auth K] | Glyco_transf_41 | e7rljK1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_transf_41 | ECOD (v294.1) |
| K [auth J] | Glyco_transf_41 | e7rljJ1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_transf_41 | ECOD (v294.1) |
| J [auth I] | Glyco_transf_41 | e7rljI1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_transf_41 | ECOD (v294.1) |
| I [auth H] | Glyco_transf_41 | e7rljH1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_transf_41 | ECOD (v294.1) |
| H [auth G] | Glyco_transf_41 | e7rljG1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_transf_41 | ECOD (v294.1) |
| G [auth L] | Glyco_transf_41 | e7rljL1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_transf_41 | ECOD (v294.1) |
| F | Glyco_transf_41 | e7rljF1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_transf_41 | ECOD (v294.1) |
| E | Glyco_transf_41 | e7rljE1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_transf_41 | ECOD (v294.1) |
| D | Glyco_transf_41 | e7rljD1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_transf_41 | ECOD (v294.1) |
| C | Glyco_transf_41 | e7rljC1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_transf_41 | ECOD (v294.1) |
| B | Glyco_transf_41 | e7rljB1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_transf_41 | ECOD (v294.1) |
| A | Glyco_transf_41 | e7rljA1 | A: a/b three-layered sandwiches | X: RNase A-like | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Glyco_transf_41 | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF02933 | Cell division protein 48 (CDC48), domain 2 (CDC48_2) | Cell division protein 48 (CDC48), domain 2 | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain | |
| PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain | |
| PF02359 | Cell division protein 48 (CDC48), N-terminal domain (CDC48_N) | Cell division protein 48 (CDC48), N-terminal domain | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain | |
| PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR003959 | ATPase, AAA-type, core | Domain | |
| IPR005938 | AAA ATPase, CDC48 family | Family | |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
| IPR029067 | CDC48 domain 2-like superfamily | Homologous Superfamily | |
| IPR003338 | CDC48, N-terminal subdomain | Domain | |
| IPR004201 | CDC48, domain 2 | Domain | |
| IPR009010 | Aspartate decarboxylase-like domain superfamily | Homologous Superfamily | |
| IPR003593 | AAA+ ATPase domain | Domain | |
| IPR041569 | AAA ATPase, AAA+ lid domain | Domain | |
| IPR050168 | AAA ATPase domain-containing protein | Family | |
| IPR003960 | ATPase, AAA-type, conserved site | Conserved Site |














