7RDB | pdb_00007rdb

Crystal structure of Tspan15 large extracellular loop (Tspan15 LEL)

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	Arm, ARM_PUB	e7rdbB1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
K	Arm, ARM_PUB	e7rdbK1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
P	Arm, ARM_PUB	e7rdbP1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
X	Arm, ARM_PUB	e7rdbX1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
W	Arm, ARM_PUB	e7rdbW1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
V	Arm, ARM_PUB	e7rdbV1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
U	Arm, ARM_PUB	e7rdbU1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
T	Arm, ARM_PUB	e7rdbT1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
S	Arm, ARM_PUB	e7rdbS1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
R	Arm, ARM_PUB	e7rdbR1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
Q	Arm, ARM_PUB	e7rdbQ1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
O	Arm, ARM_PUB	e7rdbO1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
N	Arm, ARM_PUB	e7rdbN1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
M	Arm, ARM_PUB	e7rdbM1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
L	Arm, ARM_PUB	e7rdbL1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
J	Arm, ARM_PUB	e7rdbJ1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
I	Arm, ARM_PUB	e7rdbI1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
H	Arm, ARM_PUB	e7rdbH1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
G	Arm, ARM_PUB	e7rdbG1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
F	Arm, ARM_PUB	e7rdbF1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
E	Arm, ARM_PUB	e7rdbE1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
D	Arm, ARM_PUB	e7rdbD1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
C	Arm, ARM_PUB	e7rdbC1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)
B [auth A]	Arm, ARM_PUB	e7rdbA1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Arm, ARM_PUB	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth B]	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
K	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
P	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
X	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
W	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
V	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
U	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
T	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
S	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
R	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
Q	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
O	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
N	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
M	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
L	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
J	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
I	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
H	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
G	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
F	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
E	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
D	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
C	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)
B [auth A]	1.10.1450.10	Mainly Alpha	Orthogonal Bundle	Cd81 Antigen, Extracellular Domain	Chain: A	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	PF00335	Tetraspanin family (Tetraspanin)	Tetraspanin family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	Tetraspanin-15	protein binding binding enzyme binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation regulation of membrane protein ectodomain proteolysis regulation of biological process regulation of cellular process catabolic process regulation of protein metabolic process biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation regulation of membrane protein ectodomain proteolysis regulation of biological process regulation of cellular process catabolic process regulation of protein metabolic process biological regulation regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process macromolecule catabolic process regulation of primary metabolic process regulation of proteolysis proteolysis membrane protein proteolysis regulation of metabolic process regulation of protein catabolic process membrane protein ectodomain proteolysis localization protein localization to cell periphery cellular localization protein localization to plasma membrane macromolecule localization intracellular protein localization localization within membrane protein localization to membrane cellular response to stimulus response to stimulus negative regulation of signaling signaling negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication negative regulation of cellular process signal transduction regulation of signaling cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of signal transduction Notch signaling pathway negative regulation of Notch signaling pathway regulation of response to stimulus regulation of Notch signaling pathway regulation of cell communication	cellular anatomical structure cell junction membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen organelle endoplasmic reticulum cytoplasm cellular anatomical structure cell junction membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen organelle endoplasmic reticulum cytoplasm cell surface cytosol cell periphery plasma membrane membrane endosome membrane endosome intracellular vesicle late endosome membrane cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane late endosome vesicle organelle membrane nucleus intracellular membraneless organelle nuclear body nucleoplasm membraneless organelle nuclear lumen tetraspanin-enriched microdomain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR008952	Tetraspanin, EC2 domain superfamily	Homologous Superfamily
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR000301	Tetraspanin, animals	Family
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR018499	Tetraspanin/Peripherin	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth B], B [auth A], C, D, E, A [auth B], B [auth A], C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	: O95858	malignant pancreatic neoplasm MALT lymphoma vascular disease

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.